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The map label for this gene is yrkH [H]

Identifier: 222527082

GI number: 222527082

Start: 4805935

End: 4807119

Strand: Reverse

Name: yrkH [H]

Synonym: Chy400_3861

Alternate gene names: 222527082

Gene position: 4807119-4805935 (Counterclockwise)

Preceding gene: 222527086

Following gene: 222527081

Centisome position: 91.23

GC content: 55.95

Gene sequence:

>1185_bases
ATGACAACTCTCAACTATCCGCCATCCGGGCTTAGTGTCTTAGAACCGGCGGAATTGTATGCCGAACTCCTGGCCGGACA
ACCCCTGTTTATTCTTGATGTGCGGAATGAACTGGAATATGCCCGCAATCGGATACGTGGGCGATACCCGGTACCAACCC
TCAACATTCCGTACTTTGCGTTTATCGAAGATGAAGAGAGTGCGGTAGCCCAGGTGCCGACGGATCAACTCCTGACAGTT
ATTTGCGCTAAAGAAGGTTCATCGCAGTATGTCGCCGAACTGTTAGCCGCTCGTGGGATTGCCACCCGCTACCTGCGTGG
CGGATTTCAAGCCTGGCTTGATTTCTACGATGTTCGCGATGTGGTTAATGCCGGTTGGGGACGCATTATCCAGATCATCC
GCCCGGCGCGTGGTGATCTCAGTTATGTGATCATCAGTGCCGGTGAAGCTGCTGTCGTTGATCCTGGTCGCCATATTCAC
CTGTATCAGGAGGTGGCTGCTGCGGCTGACGCCGACATAACACGGGTATTGTTAACCCATCTCGCAGCAGGGCGGCTGTC
GGGTGGAGCAGCGCTGGCCGGTGAGCGGAAGGCGTTACTGGCGATGCATCCCTACGATGCCCTTCATCCACGAACCCTAT
CGCCGGCTCATCTGACGTATGTCCCCTTGCTTGGCGGTGAACGGGTAGCACTGGGGCAATTATTGATCGAAGCCCACTGG
TTCCCCGGTCACACACCCGGTCATCTGGTCTACCGCGTGATCTCGCCAATGGGTGATCGCTTCTTGTTGACCGGTGATGC
CCTGCTTCTGAATGGATGTGGTCGTACCGACCTCGGTGGTCATGCCCAGGAATGGACAGCGTTGCTCTTCCGTAGTTTGC
AGGAAGTTCTGCCGACGCTGGTCGATGATCGGACGCTGATACTACCATCTTCATTCCTGAGTCTGGCTGAAACCCGATCC
GATGGTGTAGTAGCCGCACCGTTTGCTGCGCTGCGCGCACAGCATCCGGCGTTGCAGGTTGACAGTGCAGCGTCGTTGCT
GCCAATGGTGACCACGCCATCATCAGAGCTGCCGGCAGCGGTCGATACCTTCTGGCGTGTCAATTTGGGGCTGCAACCTC
TGACTGATGAAGAGGCTTTGGAACTGGAGGTTGAGCCATCATTGTGTGGATTAAGCGGGTATTGA

Upstream 100 bases:

>100_bases
CAGGTCACCTGGATTGTACTTGTTTCACCGTGTTGCAACCTCTACACTCATCTTAACGTTGTATTTGCCTGCACAATCAA
CCAACGCAAAGGAGCGTACA

Downstream 100 bases:

>100_bases
TCCAGGAACCTGATCTAACGCTTCTCTCGTGGTAGAACGCCTGTTACTGCACCGGTACAAGATCGGATATACTATCAGCA
CCGATGTGATGTACCTGGTT

Product: beta-lactamase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MTTLNYPPSGLSVLEPAELYAELLAGQPLFILDVRNELEYARNRIRGRYPVPTLNIPYFAFIEDEESAVAQVPTDQLLTV
ICAKEGSSQYVAELLAARGIATRYLRGGFQAWLDFYDVRDVVNAGWGRIIQIIRPARGDLSYVIISAGEAAVVDPGRHIH
LYQEVAAAADADITRVLLTHLAAGRLSGGAALAGERKALLAMHPYDALHPRTLSPAHLTYVPLLGGERVALGQLLIEAHW
FPGHTPGHLVYRVISPMGDRFLLTGDALLLNGCGRTDLGGHAQEWTALLFRSLQEVLPTLVDDRTLILPSSFLSLAETRS
DGVVAAPFAALRAQHPALQVDSAASLLPMVTTPSSELPAAVDTFWRVNLGLQPLTDEEALELEVEPSLCGLSGY

Sequences:

>Translated_394_residues
MTTLNYPPSGLSVLEPAELYAELLAGQPLFILDVRNELEYARNRIRGRYPVPTLNIPYFAFIEDEESAVAQVPTDQLLTV
ICAKEGSSQYVAELLAARGIATRYLRGGFQAWLDFYDVRDVVNAGWGRIIQIIRPARGDLSYVIISAGEAAVVDPGRHIH
LYQEVAAAADADITRVLLTHLAAGRLSGGAALAGERKALLAMHPYDALHPRTLSPAHLTYVPLLGGERVALGQLLIEAHW
FPGHTPGHLVYRVISPMGDRFLLTGDALLLNGCGRTDLGGHAQEWTALLFRSLQEVLPTLVDDRTLILPSSFLSLAETRS
DGVVAAPFAALRAQHPALQVDSAASLLPMVTTPSSELPAAVDTFWRVNLGLQPLTDEEALELEVEPSLCGLSGY
>Mature_393_residues
TTLNYPPSGLSVLEPAELYAELLAGQPLFILDVRNELEYARNRIRGRYPVPTLNIPYFAFIEDEESAVAQVPTDQLLTVI
CAKEGSSQYVAELLAARGIATRYLRGGFQAWLDFYDVRDVVNAGWGRIIQIIRPARGDLSYVIISAGEAAVVDPGRHIHL
YQEVAAAADADITRVLLTHLAAGRLSGGAALAGERKALLAMHPYDALHPRTLSPAHLTYVPLLGGERVALGQLLIEAHWF
PGHTPGHLVYRVISPMGDRFLLTGDALLLNGCGRTDLGGHAQEWTALLFRSLQEVLPTLVDDRTLILPSSFLSLAETRSD
GVVAAPFAALRAQHPALQVDSAASLLPMVTTPSSELPAAVDTFWRVNLGLQPLTDEEALELEVEPSLCGLSGY

Specific function: Unknown

COG id: COG0491

COG function: function code R; Zn-dependent hydrolases, including glyoxylases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR001763 [H]

Pfam domain/function: PF00753 Lactamase_B; PF00581 Rhodanese [H]

EC number: NA

Molecular weight: Translated: 42708; Mature: 42577

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS50206 RHODANESE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTLNYPPSGLSVLEPAELYAELLAGQPLFILDVRNELEYARNRIRGRYPVPTLNIPYFA
CCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCEEE
FIEDEESAVAQVPTDQLLTVICAKEGSSQYVAELLAARGIATRYLRGGFQAWLDFYDVRD
EEECCCCHHHHCCHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVNAGWGRIIQIIRPARGDLSYVIISAGEAAVVDPGRHIHLYQEVAAAADADITRVLLTH
HHHCCHHHHHHHHCCCCCCEEEEEEECCCEEEECCCCEEEHHHHHHHHCCCHHHHHHHHH
LAAGRLSGGAALAGERKALLAMHPYDALHPRTLSPAHLTYVPLLGGERVALGQLLIEAHW
HHHCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHEEC
FPGHTPGHLVYRVISPMGDRFLLTGDALLLNGCGRTDLGGHAQEWTALLFRSLQEVLPTL
CCCCCHHHHHHHHHCCCCCEEEEECCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH
VDDRTLILPSSFLSLAETRSDGVVAAPFAALRAQHPALQVDSAASLLPMVTTPSSELPAA
HCCCEEEECHHHHHHHHHCCCCEEECCHHHHHCCCCCEEECCHHHHEEEEECCCCCCCHH
VDTFWRVNLGLQPLTDEEALELEVEPSLCGLSGY
HHHHEEEECCCCCCCCCCCEEEEECCCCCCCCCC
>Mature Secondary Structure 
TTLNYPPSGLSVLEPAELYAELLAGQPLFILDVRNELEYARNRIRGRYPVPTLNIPYFA
CCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCEEE
FIEDEESAVAQVPTDQLLTVICAKEGSSQYVAELLAARGIATRYLRGGFQAWLDFYDVRD
EEECCCCHHHHCCHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVNAGWGRIIQIIRPARGDLSYVIISAGEAAVVDPGRHIHLYQEVAAAADADITRVLLTH
HHHCCHHHHHHHHCCCCCCEEEEEEECCCEEEECCCCEEEHHHHHHHHCCCHHHHHHHHH
LAAGRLSGGAALAGERKALLAMHPYDALHPRTLSPAHLTYVPLLGGERVALGQLLIEAHW
HHHCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHEEC
FPGHTPGHLVYRVISPMGDRFLLTGDALLLNGCGRTDLGGHAQEWTALLFRSLQEVLPTL
CCCCCHHHHHHHHHCCCCCEEEEECCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH
VDDRTLILPSSFLSLAETRSDGVVAAPFAALRAQHPALQVDSAASLLPMVTTPSSELPAA
HCCCEEEECHHHHHHHHHCCCCEEECCHHHHHCCCCCEEECCHHHHEEEEECCCCCCCHH
VDTFWRVNLGLQPLTDEEALELEVEPSLCGLSGY
HHHHEEEECCCCCCCCCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]