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The map label for this gene is sufD [H]

Identifier: 222526973

GI number: 222526973

Start: 4672722

End: 4673936

Strand: Direct

Name: sufD [H]

Synonym: Chy400_3751

Alternate gene names: 222526973

Gene position: 4672722-4673936 (Clockwise)

Preceding gene: 222526972

Following gene: 222526974

Centisome position: 88.68

GC content: 58.52

Gene sequence:

>1215_bases
ATGACGACAACACTCCCAACCCTAAACGAAATCAGTGCTGAGTTTGTTGTGGCCCGCTCGCAAGCGGCCGGCGAGCCAGC
CTGGTTGACCGAGCGCCGGCGTGAGGCATGGGCTGCATTCGCGCAGATGAATCCACCAGAGTGGCGACGTACCGATCTGA
GCAAGCTCGATCCGACGACGATTGCCCCTGCCGATGGCGCGCATGCAACTGCGATCCAGTGGGACCCGGCCCTGAGTAGC
CAGGGTGTCATCTTCACCACGCTGGCTGCCGCCTTGCACAGCCATGAGGCACTGATTCAGCGTTACATGGATACGGCGGT
TGAGCCGTTGAAGCATAAGTTTAGCGCCCTGCGCGCTGCGCTCTGGCAAGACGGTGCGTTGCTGTACGTGCCCAAAGGTG
TGGCAATCGAAGTGCCACTGCGTCTGATCTACACGCTGGGCGCTGACGGGGTGGCAATCTTCCCGCGCACGCTGGTGATT
GTCGAACCGCAGGCAAGTGTTACCCTCATCGAGGAGTTTACCTCGCCTGATCTGCGTGCCGGTTCGTTTGCCGGCCCCAT
TACCGAAATCTTTGTCGGTGATGGCGCCAGTGTGCGCTTTGTCAGCATTCAGCACTGGGGCACCGGTGTGTACCATCTGG
GTGGGCAGCGGGCAATCTTGCAGCGCGATGCCAGCCTGGAGTGGACATCCATTCAACTCGGCGGGCAGGTGCAGCATATA
GAAGCTGAAACGACACTGGTGGGCAATGGCTCGCGGCTGAACTGGCTTGGGGCAACATTTGCTGCCGATAGTCAGCATCT
GGTTATCGCGCCCTGGATGCGCCACGTCGGACACAATTGCGAGAGCTTTATGCAGTTTAAGACGGTGGTCAACGATACCG
CGTACAGTGTGTTCGACGGCATGATCAAGATCGAGCACGAGTCGGCGGCTACCAGTACCCGGCTGGAAGAGCATGCTCTT
CACCTCAGTCCCAAGGCACGGAACGACAGTATTCCCGGCCTGATGATTAGCACGAATGACGTGTTGAAGGGTGGCCATGC
TTCAACCAGCGGTGATATTGACGAAGAGCAGCTCTTCTATATGCAAACCCGCGGTATTCCACGGGTAGAAGCGCAACGCA
TGATCGTGATGGGTTTCTTCGAGCCGGCACTTGAAACGGTGCCGCTGGAAGAGCTGCGGGCTGAGCTGACGGCAGAGATT
GCAGCCAAAATCTAG

Upstream 100 bases:

>100_bases
TCGTCCGCGAGGGTGGTCCTGAGCTGGCGCTGGAGCTGGAAGAGAAGGGTTACGATTGGCTCCGCGAAGAGCTGACCGGT
GCAGCATAGGGGGAATGTAG

Downstream 100 bases:

>100_bases
GGTGATCTTGCCGCAGGTTGGGTTAGCCTGCGGCAAGCCCCCGGATACGGTCGTCGGAGAGCGCCTTGCCGTATAGACTG
TCGCCGACAATCCTGGCGGT

Product: FeS assembly protein SufD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MTTTLPTLNEISAEFVVARSQAAGEPAWLTERRREAWAAFAQMNPPEWRRTDLSKLDPTTIAPADGAHATAIQWDPALSS
QGVIFTTLAAALHSHEALIQRYMDTAVEPLKHKFSALRAALWQDGALLYVPKGVAIEVPLRLIYTLGADGVAIFPRTLVI
VEPQASVTLIEEFTSPDLRAGSFAGPITEIFVGDGASVRFVSIQHWGTGVYHLGGQRAILQRDASLEWTSIQLGGQVQHI
EAETTLVGNGSRLNWLGATFAADSQHLVIAPWMRHVGHNCESFMQFKTVVNDTAYSVFDGMIKIEHESAATSTRLEEHAL
HLSPKARNDSIPGLMISTNDVLKGGHASTSGDIDEEQLFYMQTRGIPRVEAQRMIVMGFFEPALETVPLEELRAELTAEI
AAKI

Sequences:

>Translated_404_residues
MTTTLPTLNEISAEFVVARSQAAGEPAWLTERRREAWAAFAQMNPPEWRRTDLSKLDPTTIAPADGAHATAIQWDPALSS
QGVIFTTLAAALHSHEALIQRYMDTAVEPLKHKFSALRAALWQDGALLYVPKGVAIEVPLRLIYTLGADGVAIFPRTLVI
VEPQASVTLIEEFTSPDLRAGSFAGPITEIFVGDGASVRFVSIQHWGTGVYHLGGQRAILQRDASLEWTSIQLGGQVQHI
EAETTLVGNGSRLNWLGATFAADSQHLVIAPWMRHVGHNCESFMQFKTVVNDTAYSVFDGMIKIEHESAATSTRLEEHAL
HLSPKARNDSIPGLMISTNDVLKGGHASTSGDIDEEQLFYMQTRGIPRVEAQRMIVMGFFEPALETVPLEELRAELTAEI
AAKI
>Mature_403_residues
TTTLPTLNEISAEFVVARSQAAGEPAWLTERRREAWAAFAQMNPPEWRRTDLSKLDPTTIAPADGAHATAIQWDPALSSQ
GVIFTTLAAALHSHEALIQRYMDTAVEPLKHKFSALRAALWQDGALLYVPKGVAIEVPLRLIYTLGADGVAIFPRTLVIV
EPQASVTLIEEFTSPDLRAGSFAGPITEIFVGDGASVRFVSIQHWGTGVYHLGGQRAILQRDASLEWTSIQLGGQVQHIE
AETTLVGNGSRLNWLGATFAADSQHLVIAPWMRHVGHNCESFMQFKTVVNDTAYSVFDGMIKIEHESAATSTRLEEHALH
LSPKARNDSIPGLMISTNDVLKGGHASTSGDIDEEQLFYMQTRGIPRVEAQRMIVMGFFEPALETVPLEELRAELTAEIA
AKI

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=441, Percent_Identity=23.8095238095238, Blast_Score=141, Evalue=7e-35,
Organism=Escherichia coli, GI1787971, Length=296, Percent_Identity=28.7162162162162, Blast_Score=102, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 44227; Mature: 44096

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTLPTLNEISAEFVVARSQAAGEPAWLTERRREAWAAFAQMNPPEWRRTDLSKLDPTT
CCCCCCCHHHHCHHHEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCHHHCCCCE
IAPADGAHATAIQWDPALSSQGVIFTTLAAALHSHEALIQRYMDTAVEPLKHKFSALRAA
ECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LWQDGALLYVPKGVAIEVPLRLIYTLGADGVAIFPRTLVIVEPQASVTLIEEFTSPDLRA
HHCCCCEEEECCCCEEEECEEEEEEECCCCEEECCEEEEEECCCCCEEHEEHHCCCCCCC
GSFAGPITEIFVGDGASVRFVSIQHWGTGVYHLGGQRAILQRDASLEWTSIQLGGQVQHI
CCCCCCCEEEEECCCCEEEEEEEEECCCEEEEECCCEEEEECCCCCEEEEEEECCEEEEE
EAETTLVGNGSRLNWLGATFAADSQHLVIAPWMRHVGHNCESFMQFKTVVNDTAYSVFDG
EEEEEEEECCCEEEEEEEEEECCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
MIKIEHESAATSTRLEEHALHLSPKARNDSIPGLMISTNDVLKGGHASTSGDIDEEQLFY
EEEEECCCHHHHHHHHHHHEECCCCCCCCCCCEEEEECCHHHCCCCCCCCCCCCHHHEEE
MQTRGIPRVEAQRMIVMGFFEPALETVPLEELRAELTAEIAAKI
EHHCCCCCCCCCEEEEEEEHHHHHHCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TTTLPTLNEISAEFVVARSQAAGEPAWLTERRREAWAAFAQMNPPEWRRTDLSKLDPTT
CCCCCCHHHHCHHHEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCHHHCCCCE
IAPADGAHATAIQWDPALSSQGVIFTTLAAALHSHEALIQRYMDTAVEPLKHKFSALRAA
ECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LWQDGALLYVPKGVAIEVPLRLIYTLGADGVAIFPRTLVIVEPQASVTLIEEFTSPDLRA
HHCCCCEEEECCCCEEEECEEEEEEECCCCEEECCEEEEEECCCCCEEHEEHHCCCCCCC
GSFAGPITEIFVGDGASVRFVSIQHWGTGVYHLGGQRAILQRDASLEWTSIQLGGQVQHI
CCCCCCCEEEEECCCCEEEEEEEEECCCEEEEECCCEEEEECCCCCEEEEEEECCEEEEE
EAETTLVGNGSRLNWLGATFAADSQHLVIAPWMRHVGHNCESFMQFKTVVNDTAYSVFDG
EEEEEEEECCCEEEEEEEEEECCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
MIKIEHESAATSTRLEEHALHLSPKARNDSIPGLMISTNDVLKGGHASTSGDIDEEQLFY
EEEEECCCHHHHHHHHHHHEECCCCCCCCCCCEEEEECCHHHCCCCCCCCCCCCHHHEEE
MQTRGIPRVEAQRMIVMGFFEPALETVPLEELRAELTAEIAAKI
EHHCCCCCCCCCEEEEEEEHHHHHHCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]