Click here to switch to the map view.

The map label for this gene is ycbY [C]

Identifier: 222526814

GI number: 222526814

Start: 4462963

End: 4464099

Strand: Reverse

Name: ycbY [C]

Synonym: Chy400_3589

Alternate gene names: 222526814

Gene position: 4464099-4462963 (Counterclockwise)

Preceding gene: 222526815

Following gene: 222526811

Centisome position: 84.72

GC content: 62.18

Gene sequence:

>1137_bases
ATGCTCTACGTATTACAAACCATTCCCGGCCTGGCTGCGCTGACCTGGCGCGAAGTCGAACAGACCATTCGCCCGGAGAC
AGACCGTCCCGCACCACGTCAGATCGGCGTGCGTGCGGTGCCGGCGCGCAACGACCTGATCTTAACCGACTATCGTGGCT
CACCCCGCTCGTTGCTAGCGCTGCGTACCATCGAGGATGTCTTCGTGGTCGCTGCACGCGGCTTCAAAATTGCTCCCGAC
GAACGGGGACTACGCCAGATTCACGCCGCCACCCGCAACGAAGAAGCGATTAAGCCGGCGCTAGAGCTATGGCGACGTTT
CAACGGCGGCAAACGAAACGGCAGTTTTCGGGTTGTGACCCGTATGGTCGGAAAACACAGCTTCCACCGCCGCGATGTGG
GTAGGGCTGTCGCCGACGCTATCCGCGATGGCTGGCCCGGACGCTGGCAGCCGGTTGATGAAGACGCCGATCTGGAAGTC
TGGGCGACGCTGTTCGAGCAGGAGTTGATCGTCGCGATTCGCCTTTCAGACGCTTCAATGCGTCTGCGCGACAAGGCTGC
ACACCTGCCGGCCTCGCTGCGCCCGGCGCTGGCAGCCGCAATGGTGATGCTCACCTATCCGCAGGCTGATGATATTTTTC
TCGATCCGATGGCCGGTGCCGGCACACTGCTCCTCGAACGAGCGGCAGCCGGGCCATTTACTGCGCTCTACGGTGGTGAC
ATCAGCCCGGCGGCGGTCTCGGCAATGAACACCAACCTGCGCCAGATACGCGGCCAGATCCAAATTCGGCGCTGGAACGC
CGCCAGACTGCCATTGCCCGATGCCAGCGTCAACAAAGTAGCCGTCAATTTGCCGTTTGGCAACCAGATCAACGAAGGCG
ACGACCTGGCCGAACTGTACCGCGATGTCTTGCAACAGATTGCCCGCGTGCTCAAACCCGGTGGCCGTCTCGTTACTCTC
GTTGCGGATCAGCACCTGCTTGATCGGGCACGTGCCCACGCTGCCCCGACCCTACGCGCCACCGCCCGGCACCGCGTCTT
TGTCCTCGGCCAACGGGCAACCATTTGCGAGCATATCCGGGTTGCCGGCCCGGCGACACATCCACCGCTACCGGCAGAAG
AAGATGATTGGGAGTAG

Upstream 100 bases:

>100_bases
CCTGCATTCGGCAGAGGAGTGGGTAGAGATTGCCAGTCTGACGAGCCTGTACCAGATTATTCTCGATTATATCGACACCA
TGTAGGATGACGACCTTCAT

Downstream 100 bases:

>100_bases
GCGCGCAGTTTACGTGGGCGAATGACCTGACCACTGCAGGGAACCTGCATTCGCACGACTGGTGCGGCAGCGTGGCTGCC
GCACGCCAAACGACGCGACA

Product: putative RNA methylase

Products: NA

Alternate protein names: RNA Methyltransferase

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MLYVLQTIPGLAALTWREVEQTIRPETDRPAPRQIGVRAVPARNDLILTDYRGSPRSLLALRTIEDVFVVAARGFKIAPD
ERGLRQIHAATRNEEAIKPALELWRRFNGGKRNGSFRVVTRMVGKHSFHRRDVGRAVADAIRDGWPGRWQPVDEDADLEV
WATLFEQELIVAIRLSDASMRLRDKAAHLPASLRPALAAAMVMLTYPQADDIFLDPMAGAGTLLLERAAAGPFTALYGGD
ISPAAVSAMNTNLRQIRGQIQIRRWNAARLPLPDASVNKVAVNLPFGNQINEGDDLAELYRDVLQQIARVLKPGGRLVTL
VADQHLLDRARAHAAPTLRATARHRVFVLGQRATICEHIRVAGPATHPPLPAEEDDWE

Sequences:

>Translated_378_residues
MLYVLQTIPGLAALTWREVEQTIRPETDRPAPRQIGVRAVPARNDLILTDYRGSPRSLLALRTIEDVFVVAARGFKIAPD
ERGLRQIHAATRNEEAIKPALELWRRFNGGKRNGSFRVVTRMVGKHSFHRRDVGRAVADAIRDGWPGRWQPVDEDADLEV
WATLFEQELIVAIRLSDASMRLRDKAAHLPASLRPALAAAMVMLTYPQADDIFLDPMAGAGTLLLERAAAGPFTALYGGD
ISPAAVSAMNTNLRQIRGQIQIRRWNAARLPLPDASVNKVAVNLPFGNQINEGDDLAELYRDVLQQIARVLKPGGRLVTL
VADQHLLDRARAHAAPTLRATARHRVFVLGQRATICEHIRVAGPATHPPLPAEEDDWE
>Mature_378_residues
MLYVLQTIPGLAALTWREVEQTIRPETDRPAPRQIGVRAVPARNDLILTDYRGSPRSLLALRTIEDVFVVAARGFKIAPD
ERGLRQIHAATRNEEAIKPALELWRRFNGGKRNGSFRVVTRMVGKHSFHRRDVGRAVADAIRDGWPGRWQPVDEDADLEV
WATLFEQELIVAIRLSDASMRLRDKAAHLPASLRPALAAAMVMLTYPQADDIFLDPMAGAGTLLLERAAAGPFTALYGGD
ISPAAVSAMNTNLRQIRGQIQIRRWNAARLPLPDASVNKVAVNLPFGNQINEGDDLAELYRDVLQQIARVLKPGGRLVTL
VADQHLLDRARAHAAPTLRATARHRVFVLGQRATICEHIRVAGPATHPPLPAEEDDWE

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI166197708, Length=268, Percent_Identity=29.1044776119403, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI166197706, Length=268, Percent_Identity=29.1044776119403, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI254553431, Length=215, Percent_Identity=30.6976744186047, Blast_Score=92, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI32566195, Length=249, Percent_Identity=27.710843373494, Blast_Score=96, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41892; Mature: 41892

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYVLQTIPGLAALTWREVEQTIRPETDRPAPRQIGVRAVPARNDLILTDYRGSPRSLLA
CEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHCCEEEECCCCCEEEECCCCCCHHHHH
LRTIEDVFVVAARGFKIAPDERGLRQIHAATRNEEAIKPALELWRRFNGGKRNGSFRVVT
HHHHHHHHHHHHCCCEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHH
RMVGKHSFHRRDVGRAVADAIRDGWPGRWQPVDEDADLEVWATLFEQELIVAIRLSDASM
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCHH
RLRDKAAHLPASLRPALAAAMVMLTYPQADDIFLDPMAGAGTLLLERAAAGPFTALYGGD
HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHCCCCEEEEECCC
ISPAAVSAMNTNLRQIRGQIQIRRWNAARLPLPDASVNKVAVNLPFGNQINEGDDLAELY
CCHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHH
RDVLQQIARVLKPGGRLVTLVADQHLLDRARAHAAPTLRATARHRVFVLGQRATICEHIR
HHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCHHHHHCCCEEEEEECCHHHHHHHH
VAGPATHPPLPAEEDDWE
HCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLYVLQTIPGLAALTWREVEQTIRPETDRPAPRQIGVRAVPARNDLILTDYRGSPRSLLA
CEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHCCEEEECCCCCEEEECCCCCCHHHHH
LRTIEDVFVVAARGFKIAPDERGLRQIHAATRNEEAIKPALELWRRFNGGKRNGSFRVVT
HHHHHHHHHHHHCCCEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHH
RMVGKHSFHRRDVGRAVADAIRDGWPGRWQPVDEDADLEVWATLFEQELIVAIRLSDASM
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECCCHH
RLRDKAAHLPASLRPALAAAMVMLTYPQADDIFLDPMAGAGTLLLERAAAGPFTALYGGD
HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHCCCCEEEEECCC
ISPAAVSAMNTNLRQIRGQIQIRRWNAARLPLPDASVNKVAVNLPFGNQINEGDDLAELY
CCHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHH
RDVLQQIARVLKPGGRLVTLVADQHLLDRARAHAAPTLRATARHRVFVLGQRATICEHIR
HHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCHHHHHCCCEEEEEECCHHHHHHHH
VAGPATHPPLPAEEDDWE
HCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA