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The map label for this gene is 222524163

Identifier: 222524163

GI number: 222524163

Start: 1109010

End: 1109603

Strand: Reverse

Name: 222524163

Synonym: Chy400_0879

Alternate gene names: NA

Gene position: 1109603-1109010 (Counterclockwise)

Preceding gene: 222524168

Following gene: 222524162

Centisome position: 21.06

GC content: 52.86

Gene sequence:

>594_bases
ATGCGGCGGTTCCTGTTCATCTGCTGGATAGTGATGATATGCACGGCCTGCTCGGCTGTCAGTCCACCGGGCACGACAAC
CGCAACCATCATCGATCCCCCAACTGTGTTGAGTGATTTTCAGTTGCCGGCCAGTACCGGTCATGATCTACGGTTGAGTG
ATTTACGTGGTCAGCCGGTGTTGCTCTATTTCGGGTATACCCGTTGTCCTGACTATTGTCCGATTACGCTCAGTGAATTT
CGGCGCACACGCGAACAACTCGGTGCTGATGGTGAAAAGGTGCATTTCGTGTTGATCAGCGTTGATCCGGCGCACGATAC
GCCAGAGGTCCTTGCTGCGTATCTACGTGGTTTTGGTGAGGGTTTTATCGGCTTGCAGGGTGATGATGCGACGCTGCGCC
GTATCAGTAAAGAGTACGGTCTGACGTATCGCCATGGAGGGGGCCATCAACAGCATGGCGACGCCGGTGTCGAACACAGT
ACGGCGAGTTATTTAATCGATCAGAATGGCCGGCTACGGATCGTTTATCAATATGGAACCGCTGCGAATGTGTATGTGCA
AGACATTCGCGATCTGCTCAAAGAAGCTCAATGA

Upstream 100 bases:

>100_bases
GCGGCGCCCGGTACAACCTTTCGGCTGACGGTGCCGGTTAATCTGATGGTTGTCGATCAACTGTTTTCAGTCTATACGCC
ACTTATTGTGAGGTAATATC

Downstream 100 bases:

>100_bases
ACTATCGTTTAAGCCGCCGTTCACTGCTGACATTAGGTGTTGTTGCTCTCAGTCAGACGGTTGTCCGTGCGCAAACGCCG
GAAACGCAACCGATTTATCT

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MRRFLFICWIVMICTACSAVSPPGTTTATIIDPPTVLSDFQLPASTGHDLRLSDLRGQPVLLYFGYTRCPDYCPITLSEF
RRTREQLGADGEKVHFVLISVDPAHDTPEVLAAYLRGFGEGFIGLQGDDATLRRISKEYGLTYRHGGGHQQHGDAGVEHS
TASYLIDQNGRLRIVYQYGTAANVYVQDIRDLLKEAQ

Sequences:

>Translated_197_residues
MRRFLFICWIVMICTACSAVSPPGTTTATIIDPPTVLSDFQLPASTGHDLRLSDLRGQPVLLYFGYTRCPDYCPITLSEF
RRTREQLGADGEKVHFVLISVDPAHDTPEVLAAYLRGFGEGFIGLQGDDATLRRISKEYGLTYRHGGGHQQHGDAGVEHS
TASYLIDQNGRLRIVYQYGTAANVYVQDIRDLLKEAQ
>Mature_197_residues
MRRFLFICWIVMICTACSAVSPPGTTTATIIDPPTVLSDFQLPASTGHDLRLSDLRGQPVLLYFGYTRCPDYCPITLSEF
RRTREQLGADGEKVHFVLISVDPAHDTPEVLAAYLRGFGEGFIGLQGDDATLRRISKEYGLTYRHGGGHQQHGDAGVEHS
TASYLIDQNGRLRIVYQYGTAANVYVQDIRDLLKEAQ

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=154, Percent_Identity=33.7662337662338, Blast_Score=80, Evalue=9e-16,
Organism=Homo sapiens, GI281182722, Length=154, Percent_Identity=33.7662337662338, Blast_Score=80, Evalue=9e-16,
Organism=Homo sapiens, GI281182716, Length=154, Percent_Identity=33.7662337662338, Blast_Score=80, Evalue=9e-16,
Organism=Homo sapiens, GI153791313, Length=154, Percent_Identity=33.7662337662338, Blast_Score=80, Evalue=9e-16,
Organism=Homo sapiens, GI4759068, Length=144, Percent_Identity=29.8611111111111, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17531419, Length=141, Percent_Identity=29.0780141843972, Blast_Score=72, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6319498, Length=134, Percent_Identity=34.3283582089552, Blast_Score=79, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6319511, Length=140, Percent_Identity=29.2857142857143, Blast_Score=69, Evalue=5e-13,
Organism=Drosophila melanogaster, GI19920710, Length=135, Percent_Identity=29.6296296296296, Blast_Score=77, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 21881; Mature: 21881

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRFLFICWIVMICTACSAVSPPGTTTATIIDPPTVLSDFQLPASTGHDLRLSDLRGQPV
CCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHCCCCCCCCCCCEEEECCCCCEE
LLYFGYTRCPDYCPITLSEFRRTREQLGADGEKVHFVLISVDPAHDTPEVLAAYLRGFGE
EEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHCCC
GFIGLQGDDATLRRISKEYGLTYRHGGGHQQHGDAGVEHSTASYLIDQNGRLRIVYQYGT
CCEEECCCHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECC
AANVYVQDIRDLLKEAQ
CCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRRFLFICWIVMICTACSAVSPPGTTTATIIDPPTVLSDFQLPASTGHDLRLSDLRGQPV
CCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHCCCCCCCCCCCEEEECCCCCEE
LLYFGYTRCPDYCPITLSEFRRTREQLGADGEKVHFVLISVDPAHDTPEVLAAYLRGFGE
EEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHCCC
GFIGLQGDDATLRRISKEYGLTYRHGGGHQQHGDAGVEHSTASYLIDQNGRLRIVYQYGT
CCEEECCCHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECC
AANVYVQDIRDLLKEAQ
CCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA