| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
Click here to switch to the map view.
The map label for this gene is murF [H]
Identifier: 222524108
GI number: 222524108
Start: 1036643
End: 1038136
Strand: Reverse
Name: murF [H]
Synonym: Chy400_0824
Alternate gene names: 222524108
Gene position: 1038136-1036643 (Counterclockwise)
Preceding gene: 222524109
Following gene: 222524107
Centisome position: 19.7
GC content: 58.63
Gene sequence:
>1494_bases TTGATCAGGCTCGACAATTTATTGTACGGAGTACAACCTCGTGTGATACGACAGGCGGTAACGCTGCCGCCGTCCTGGGC CAATGCTCAGATTGGCCCGGTGGTAACCGACTCGCGCGAGGTAACGCCGGGATCGCTCTTTGTGGCATTAACCGGCGAAC GCACCGATGGACACCGTTTTCTGGCCGATGTGGTGACACGCGGTGCTGCGGCGGCGCTGGTTTCACCAGAAAAACTGACT GCGCTGGCATCCAATCTCGATACAGTCGCTCGCCCCTGGCGGTTGATCGAACCGGCGCAGGCTCAGACTCTGGCAACCGT TCCGCCTGACGCATGTCTCCTCATCGCTGTAGACGACCCGCTCTTCGCCTTGCAGCGCGTGGCCGTCTACCATCGACAGA TGTTCACGCCGACGGTGATTGGGATCACCGGCAGTGTGGGCAAGACCTCGACAAAAGAGGTTGTGGCGGCGGTCTGTAGC CGACGCCTGCGTACCTTAAAAAGTCAACGTAGTTTTAATAGTGAGGTGACGTTACCGGCAACCTTACTCGGGCTGACTGC CGACCATCAAGTGGCAGTGCTCGAGATGGGGATGTGGGCGGCGGGTGAGATTCGCTTTCTGGCGACGCTTGCCCGCCCCC AGATCGGTATTGTGACCAATGTTGGCCCTTCGCATCTGGAACGGTTGGGAAGTATCGAGGCCATTGCGAATGCAAAGGCC GAACTGCCTGAGTCGTTGCCCGCCGATGGCTGGTGTATCCTTAATGCCGATGACCACCGGGTGGCGGCAATGGCGAGTCG CACTGCTGCTCGGGTGCTGACCTACGGCTACGCGCCAAACGCCGATGTGCGTTTACTTGATGTGGTGAGTCATGGATTGT ACGGGATCGAGTTGACGGTTGGCTATGAAGGCCAGAGTCATCGCCTGACCACACCACTGATCGGTCGCCACCACGCCTAT ACAGCGCTGGCAGCCATTGCTGCCGGGCTGGTGCTGGGGCTGGACTGGGATGCAATTGCCGAAGGGTTGCGTGAACCGGG TGAACAATTGCGATTGCGTATCGTGCCCGGTCAGCATGGAACAACTATTATCGATGACACCTACAACGCGGCACCACTTT CGACTATTGCTGCGCTTCAGGTACTGGCTGAAACCAAAGGGCGACGGATTGCCGTGTTAGGCGAAATGCTCGAACTGGGT GCAGCCAGCGTTGAAGGTCATCAGCAGGTAGGGGCTGCGGCGGCAACGATGGCCGATGTGCTGGTTGCCGTTGGGCGACA GGCGCATACCATGGCCGAGGCAGCACGTTCAGCCGGAATGCCGGCAGAGCAGATTCTGGTATGCGACAATAATGAGGCGG CGATCAACTTGCTGAACCGGTACATCCAGCCCGGTGACCACCTGCTTATCAAAGGGTCGCGCGGCGTACAGATGGAGACG ATTGTTGCCGCCTTGCAGGCTACTACTCGTAACGACACAGGAGAAATTGCGTGA
Upstream 100 bases:
>100_bases CAGCTTGTGCCGACCTCTACCGATAGAGGTCGGCGAAAGGGAGATGCTATAATGGCCTCCGCAAGACGGTTGGTTTCGGC AACGGCTTGGGGAGGGCACA
Downstream 100 bases:
>100_bases GCGTCCTTCGTGCAGTGCTGGTTCAGGATATGGCGCGTGCCCTCTTGCTTGCTGCGGCAGCGTTTGTGTTGACCCTGATC ATCGGTGGGTGGTGGGTACG
Product: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase
Products: NA
Alternate protein names: D-alanyl-D-alanine-adding enzyme; UDP-MurNAc-pentapeptide synthetase [H]
Number of amino acids: Translated: 497; Mature: 497
Protein sequence:
>497_residues MIRLDNLLYGVQPRVIRQAVTLPPSWANAQIGPVVTDSREVTPGSLFVALTGERTDGHRFLADVVTRGAAAALVSPEKLT ALASNLDTVARPWRLIEPAQAQTLATVPPDACLLIAVDDPLFALQRVAVYHRQMFTPTVIGITGSVGKTSTKEVVAAVCS RRLRTLKSQRSFNSEVTLPATLLGLTADHQVAVLEMGMWAAGEIRFLATLARPQIGIVTNVGPSHLERLGSIEAIANAKA ELPESLPADGWCILNADDHRVAAMASRTAARVLTYGYAPNADVRLLDVVSHGLYGIELTVGYEGQSHRLTTPLIGRHHAY TALAAIAAGLVLGLDWDAIAEGLREPGEQLRLRIVPGQHGTTIIDDTYNAAPLSTIAALQVLAETKGRRIAVLGEMLELG AASVEGHQQVGAAAATMADVLVAVGRQAHTMAEAARSAGMPAEQILVCDNNEAAINLLNRYIQPGDHLLIKGSRGVQMET IVAALQATTRNDTGEIA
Sequences:
>Translated_497_residues MIRLDNLLYGVQPRVIRQAVTLPPSWANAQIGPVVTDSREVTPGSLFVALTGERTDGHRFLADVVTRGAAAALVSPEKLT ALASNLDTVARPWRLIEPAQAQTLATVPPDACLLIAVDDPLFALQRVAVYHRQMFTPTVIGITGSVGKTSTKEVVAAVCS RRLRTLKSQRSFNSEVTLPATLLGLTADHQVAVLEMGMWAAGEIRFLATLARPQIGIVTNVGPSHLERLGSIEAIANAKA ELPESLPADGWCILNADDHRVAAMASRTAARVLTYGYAPNADVRLLDVVSHGLYGIELTVGYEGQSHRLTTPLIGRHHAY TALAAIAAGLVLGLDWDAIAEGLREPGEQLRLRIVPGQHGTTIIDDTYNAAPLSTIAALQVLAETKGRRIAVLGEMLELG AASVEGHQQVGAAAATMADVLVAVGRQAHTMAEAARSAGMPAEQILVCDNNEAAINLLNRYIQPGDHLLIKGSRGVQMET IVAALQATTRNDTGEIA >Mature_497_residues MIRLDNLLYGVQPRVIRQAVTLPPSWANAQIGPVVTDSREVTPGSLFVALTGERTDGHRFLADVVTRGAAAALVSPEKLT ALASNLDTVARPWRLIEPAQAQTLATVPPDACLLIAVDDPLFALQRVAVYHRQMFTPTVIGITGSVGKTSTKEVVAAVCS RRLRTLKSQRSFNSEVTLPATLLGLTADHQVAVLEMGMWAAGEIRFLATLARPQIGIVTNVGPSHLERLGSIEAIANAKA ELPESLPADGWCILNADDHRVAAMASRTAARVLTYGYAPNADVRLLDVVSHGLYGIELTVGYEGQSHRLTTPLIGRHHAY TALAAIAAGLVLGLDWDAIAEGLREPGEQLRLRIVPGQHGTTIIDDTYNAAPLSTIAALQVLAETKGRRIAVLGEMLELG AASVEGHQQVGAAAATMADVLVAVGRQAHTMAEAARSAGMPAEQILVCDNNEAAINLLNRYIQPGDHLLIKGSRGVQMET IVAALQATTRNDTGEIA
Specific function: Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein [H]
COG id: COG0770
COG function: function code M; UDP-N-acetylmuramyl pentapeptide synthase
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MurCDEF family [H]
Homologues:
Organism=Escherichia coli, GI1786274, Length=472, Percent_Identity=35.8050847457627, Blast_Score=205, Evalue=4e-54,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004101 - InterPro: IPR013221 - InterPro: IPR000713 - InterPro: IPR005863 [H]
Pfam domain/function: PF01225 Mur_ligase; PF02875 Mur_ligase_C; PF08245 Mur_ligase_M [H]
EC number: =6.3.2.10 [H]
Molecular weight: Translated: 52745; Mature: 52745
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRLDNLLYGVQPRVIRQAVTLPPSWANAQIGPVVTDSREVTPGSLFVALTGERTDGHRF CEEECCHHHCCCHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCHHH LADVVTRGAAAALVSPEKLTALASNLDTVARPWRLIEPAQAQTLATVPPDACLLIAVDDP HHHHHHCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCEEEEEECCH LFALQRVAVYHRQMFTPTVIGITGSVGKTSTKEVVAAVCSRRLRTLKSQRSFNSEVTLPA HHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH TLLGLTADHQVAVLEMGMWAAGEIRFLATLARPQIGIVTNVGPSHLERLGSIEAIANAKA HEEECCCCCCEEEEEECCCCCCCHHEEEECCCCCEEEEECCCHHHHHHHCCHHHHHCCHH ELPESLPADGWCILNADDHRVAAMASRTAARVLTYGYAPNADVRLLDVVSHGLYGIELTV HCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHEEECCCCCCCEEEEEHHHCCCEEEEEEE GYEGQSHRLTTPLIGRHHAYTALAAIAAGLVLGLDWDAIAEGLREPGEQLRLRIVPGQHG ECCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCC TTIIDDTYNAAPLSTIAALQVLAETKGRRIAVLGEMLELGAASVEGHQQVGAAAATMADV CEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHH LVAVGRQAHTMAEAARSAGMPAEQILVCDNNEAAINLLNRYIQPGDHLLIKGSRGVQMET HHHHCCHHHHHHHHHHHCCCCHHEEEEECCCHHHHHHHHHHCCCCCEEEEECCCCCHHHH IVAALQATTRNDTGEIA HHHHHHHHCCCCCCCCC >Mature Secondary Structure MIRLDNLLYGVQPRVIRQAVTLPPSWANAQIGPVVTDSREVTPGSLFVALTGERTDGHRF CEEECCHHHCCCHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCHHH LADVVTRGAAAALVSPEKLTALASNLDTVARPWRLIEPAQAQTLATVPPDACLLIAVDDP HHHHHHCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCEEEEEECCH LFALQRVAVYHRQMFTPTVIGITGSVGKTSTKEVVAAVCSRRLRTLKSQRSFNSEVTLPA HHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH TLLGLTADHQVAVLEMGMWAAGEIRFLATLARPQIGIVTNVGPSHLERLGSIEAIANAKA HEEECCCCCCEEEEEECCCCCCCHHEEEECCCCCEEEEECCCHHHHHHHCCHHHHHCCHH ELPESLPADGWCILNADDHRVAAMASRTAARVLTYGYAPNADVRLLDVVSHGLYGIELTV HCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHEEECCCCCCCEEEEEHHHCCCEEEEEEE GYEGQSHRLTTPLIGRHHAYTALAAIAAGLVLGLDWDAIAEGLREPGEQLRLRIVPGQHG ECCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCC TTIIDDTYNAAPLSTIAALQVLAETKGRRIAVLGEMLELGAASVEGHQQVGAAAATMADV CEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHH LVAVGRQAHTMAEAARSAGMPAEQILVCDNNEAAINLLNRYIQPGDHLLIKGSRGVQMET HHHHCCHHHHHHHHHHHCCCCHHEEEEECCCHHHHHHHHHHCCCCCEEEEECCCCCHHHH IVAALQATTRNDTGEIA HHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7894708; 8905231 [H]