| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
Click here to switch to the map view.
The map label for this gene is ygcB [C]
Identifier: 222523373
GI number: 222523373
Start: 81371
End: 83776
Strand: Reverse
Name: ygcB [C]
Synonym: Chy400_0074
Alternate gene names: 222523373
Gene position: 83776-81371 (Counterclockwise)
Preceding gene: 222523374
Following gene: 222523372
Centisome position: 1.59
GC content: 56.48
Gene sequence:
>2406_bases ATGCAACTCTATCCGTACCAGCAGCGGGTGAAGGATATCATTCTTGCCGGAGAGAATGTTGTGCTTCAGGCGCCAACCGG AGCCGGCAAGACGCGGGCGGCATTGGTGCCGTTTATTGAGGGATTTTTTGATCGACCAGACACCACGCCCCGCAAATGTC TCTATGTCACGCCGATGCGGGTGCTGGCGAATCAGTTTTATGCTGAATATCGCGAGCTTGCTGCGCGCTATCAGCGCCTG CACGGACGCCAGCTCGATGTGCGTATTCAAACCGGTGAGCAGCCGGAAGATCGTCGCTTTGAAGGCGATCTTATCTTCTG TACCGTGGATCAGTTTCTCAGTAGCTATCTGATGATGCCGTACAGTTTGCCGTATCGCCTCGCAAATGTTAATGCAGGCG CGCTTGCTGGTGCGTATCTGGTCTTTGATGAGTTTCATTTGTTTGATCCTGATGCAGCATTACCCACAATCCTCCACGTC CTGCGGCAGCTTCATGGCCTGGCCCCGTTTATGCTGATGACGGCGACGTTTAGCAGTGCAATGTTGCAATCACTGGCGAC GTTGTTGCAGCCGGCACAGGTGGTTACGCTGTCGGCGGCAGAGATTGCAGCGATTAACACCCGTGGTGGTCAACCGGCCC GGCAGCGGGTGTGGCAGGTGGCCGATCAGCCGTTGCAGGCTGCGGCAGTGCTTGCCCATCATCAGCACGCTTCGCTGGTG ATTTGCAACACGGTCCGGCGGGCGCGCGAGGTCTATGCTGAACTGAAACAGCAGGCGCCGCCGGAAACTGAGGTCCTTCT CCTCCATAGTCAGTTCTTACCCGATGACCGTCGTCAGATCGAGGCAAAGTTGCGGAGTCGGCTTGGTGTGTCCTCCCAGC GCCAGCAGGCCAATCTGATCGTTGTGGCCACTCAGGTCGTTGAAGTAGGGGTTGATATTTCGGTAGAGGTGCTGCATACC GAACTGGCGCCCCCGGCCAGCCTCATTCAGCGTGCCGGACGTTGTGCGCGCTATCCTGGTGATACCGGCACAGTTATCGT GTATCCGGTTGAAACATATGTCCCTTATGCGTTCAAACCAGACGAGATCCTCAAGCACGAGATGGATGCGACTCTGGCGT GGCTGAAGGAACGACAGGGCGCAGTGTTTGACTTCGACCACGAACAGGAGCTGGTCAATGCCGTGAGTGCTGCTCGCGAC CAAAACATTATTGCAGGTATTCAGGCTGACCGTCACAATCGACGCGCGTCTATTCAGGGTTGTCTTGAGGGACAGCGTGC GGGAGCGTCACGCCTGCTGGTGCGCGATGTCGATAGCCGCCTGGTACTGATCCATCCCGATCCCGATCAGCTTCTGGCTT CGCCCTACGATGCGGTTGGTCTGAATATCCCGCTCTATTCGTTGCGGAGTATGGGAAAAGATTGGTTGCAGCGTCCAACT GATGCTCCCTGGCGCGTGCGCCGGCTCGATGAAAGCGATGCCGGCGATCAGGCAGAGAGTAATCGCCCGCTGTACCGTTG GGTTGACGTTCACGATAGCAAGGAACTGGCGCAAAGTGCGATTATTGTTGTTCACCCGGCATTAGCCGGCTACTCGGCGC ACGAAGGCTTTTCACCGGAAACCGGTAATCTACCGTTTATCTCGACGTTGCCGCCAGCCAGGCCATTGATCGACCGGCCT CGCTCAAGCCTGTACGTTGAGACCTATGCCGAGCATATCCAGCGCGTGCTTGACGCATTTCAGGAACTGGTGCTCCCGGA ACTCCGCTTTGCCGCATCTGCACTTGAATGTGCTGCCGGGTGGTCGCCTGGCAGTGTGCTGCGCGCTGCGTGGCTGGCAT GCCTGTTCCACGATGTTGGCAAACTGTCTAAGGGCTGGCAGCAGTGGGCGCATGCCTATCAGCAAGCCATTGGTCAGCCG GTTGCCAAAACGATTGCGCTGGCCCATACCACGTTTGATTTCCAAAATCCCACCCATCGCCAGGCCGAGCGAGAGGTGTC ACGTAGCACGCCTCGACCACGCCATGCCGCGGAAGGAGCACTGGCAGTTGCACAGATATTGGCCGGTGCGTTCAACATAT CTCATGAGAAGGAATTGGTACAGGCAATACTGACTGCGATTGCCCGTCATCATGCCCCCTTCGTTCAGGATTGTCAGGCA TTTTCGTTGGTGTCAGAGGCAGGCAATCTGATTCAAAATACGCTACAATTCCTGCCAGAAGAGGTAAACTATTCTCTCAA TATCAACGACTTATGGGTGAATAGTCATCATCACCAGCAATTTGCCGAATTGCTGATCAAGCCAACCAGCCGCTACGGTT GGATTGCCTACACATTACTGGCTCGTGCCTTACGACGGGCCGATCAGCGGGGCACGGAGATGGGCGCCGGGCAAACGCTT CCCTGA
Upstream 100 bases:
>100_bases AGAAGCGCGAGCGTTGGCCGAACGGTATGGCTGGCACGTTTCCTCGGTACCGACACCGACCGGCTCGACGACGCTACACG ATTTCTTTGGAGGGTAAGAT
Downstream 100 bases:
>100_bases GCAGTGGAGTATCTATGAATGCGTCAATCTATCGCAGTAAGTATTACGTTGAAAAGCGCACCGGTACCTTTGCCGATAAC CTGGTTGCGTTTGGATTGGC
Product: CRISPR-associated helicase Cas3
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 801; Mature: 801
Protein sequence:
>801_residues MQLYPYQQRVKDIILAGENVVLQAPTGAGKTRAALVPFIEGFFDRPDTTPRKCLYVTPMRVLANQFYAEYRELAARYQRL HGRQLDVRIQTGEQPEDRRFEGDLIFCTVDQFLSSYLMMPYSLPYRLANVNAGALAGAYLVFDEFHLFDPDAALPTILHV LRQLHGLAPFMLMTATFSSAMLQSLATLLQPAQVVTLSAAEIAAINTRGGQPARQRVWQVADQPLQAAAVLAHHQHASLV ICNTVRRAREVYAELKQQAPPETEVLLLHSQFLPDDRRQIEAKLRSRLGVSSQRQQANLIVVATQVVEVGVDISVEVLHT ELAPPASLIQRAGRCARYPGDTGTVIVYPVETYVPYAFKPDEILKHEMDATLAWLKERQGAVFDFDHEQELVNAVSAARD QNIIAGIQADRHNRRASIQGCLEGQRAGASRLLVRDVDSRLVLIHPDPDQLLASPYDAVGLNIPLYSLRSMGKDWLQRPT DAPWRVRRLDESDAGDQAESNRPLYRWVDVHDSKELAQSAIIVVHPALAGYSAHEGFSPETGNLPFISTLPPARPLIDRP RSSLYVETYAEHIQRVLDAFQELVLPELRFAASALECAAGWSPGSVLRAAWLACLFHDVGKLSKGWQQWAHAYQQAIGQP VAKTIALAHTTFDFQNPTHRQAEREVSRSTPRPRHAAEGALAVAQILAGAFNISHEKELVQAILTAIARHHAPFVQDCQA FSLVSEAGNLIQNTLQFLPEEVNYSLNINDLWVNSHHHQQFAELLIKPTSRYGWIAYTLLARALRRADQRGTEMGAGQTL P
Sequences:
>Translated_801_residues MQLYPYQQRVKDIILAGENVVLQAPTGAGKTRAALVPFIEGFFDRPDTTPRKCLYVTPMRVLANQFYAEYRELAARYQRL HGRQLDVRIQTGEQPEDRRFEGDLIFCTVDQFLSSYLMMPYSLPYRLANVNAGALAGAYLVFDEFHLFDPDAALPTILHV LRQLHGLAPFMLMTATFSSAMLQSLATLLQPAQVVTLSAAEIAAINTRGGQPARQRVWQVADQPLQAAAVLAHHQHASLV ICNTVRRAREVYAELKQQAPPETEVLLLHSQFLPDDRRQIEAKLRSRLGVSSQRQQANLIVVATQVVEVGVDISVEVLHT ELAPPASLIQRAGRCARYPGDTGTVIVYPVETYVPYAFKPDEILKHEMDATLAWLKERQGAVFDFDHEQELVNAVSAARD QNIIAGIQADRHNRRASIQGCLEGQRAGASRLLVRDVDSRLVLIHPDPDQLLASPYDAVGLNIPLYSLRSMGKDWLQRPT DAPWRVRRLDESDAGDQAESNRPLYRWVDVHDSKELAQSAIIVVHPALAGYSAHEGFSPETGNLPFISTLPPARPLIDRP RSSLYVETYAEHIQRVLDAFQELVLPELRFAASALECAAGWSPGSVLRAAWLACLFHDVGKLSKGWQQWAHAYQQAIGQP VAKTIALAHTTFDFQNPTHRQAEREVSRSTPRPRHAAEGALAVAQILAGAFNISHEKELVQAILTAIARHHAPFVQDCQA FSLVSEAGNLIQNTLQFLPEEVNYSLNINDLWVNSHHHQQFAELLIKPTSRYGWIAYTLLARALRRADQRGTEMGAGQTL P >Mature_801_residues MQLYPYQQRVKDIILAGENVVLQAPTGAGKTRAALVPFIEGFFDRPDTTPRKCLYVTPMRVLANQFYAEYRELAARYQRL HGRQLDVRIQTGEQPEDRRFEGDLIFCTVDQFLSSYLMMPYSLPYRLANVNAGALAGAYLVFDEFHLFDPDAALPTILHV LRQLHGLAPFMLMTATFSSAMLQSLATLLQPAQVVTLSAAEIAAINTRGGQPARQRVWQVADQPLQAAAVLAHHQHASLV ICNTVRRAREVYAELKQQAPPETEVLLLHSQFLPDDRRQIEAKLRSRLGVSSQRQQANLIVVATQVVEVGVDISVEVLHT ELAPPASLIQRAGRCARYPGDTGTVIVYPVETYVPYAFKPDEILKHEMDATLAWLKERQGAVFDFDHEQELVNAVSAARD QNIIAGIQADRHNRRASIQGCLEGQRAGASRLLVRDVDSRLVLIHPDPDQLLASPYDAVGLNIPLYSLRSMGKDWLQRPT DAPWRVRRLDESDAGDQAESNRPLYRWVDVHDSKELAQSAIIVVHPALAGYSAHEGFSPETGNLPFISTLPPARPLIDRP RSSLYVETYAEHIQRVLDAFQELVLPELRFAASALECAAGWSPGSVLRAAWLACLFHDVGKLSKGWQQWAHAYQQAIGQP VAKTIALAHTTFDFQNPTHRQAEREVSRSTPRPRHAAEGALAVAQILAGAFNISHEKELVQAILTAIARHHAPFVQDCQA FSLVSEAGNLIQNTLQFLPEEVNYSLNINDLWVNSHHHQQFAELLIKPTSRYGWIAYTLLARALRRADQRGTEMGAGQTL P
Specific function: Unknown
COG id: COG1203
COG function: function code R; Predicted helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR006474 - InterPro: IPR014021 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]
EC number: NA
Molecular weight: Translated: 89348; Mature: 89348
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQLYPYQQRVKDIILAGENVVLQAPTGAGKTRAALVPFIEGFFDRPDTTPRKCLYVTPMR CCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECHHH VLANQFYAEYRELAARYQRLHGRQLDVRIQTGEQPEDRRFEGDLIFCTVDQFLSSYLMMP HHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHCCC YSLPYRLANVNAGALAGAYLVFDEFHLFDPDAALPTILHVLRQLHGLAPFMLMTATFSSA CCCCEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH MLQSLATLLQPAQVVTLSAAEIAAINTRGGQPARQRVWQVADQPLQAAAVLAHHQHASLV HHHHHHHHHCCCHHEEEEHHHEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCEE ICNTVRRAREVYAELKQQAPPETEVLLLHSQFLPDDRRQIEAKLRSRLGVSSQRQQANLI HHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCHHHHHHHHHHHHCCCCCCCCCCCEE VVATQVVEVGVDISVEVLHTELAPPASLIQRAGRCARYPGDTGTVIVYPVETYVPYAFKP EEEEHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCEEEEEHHHCCCCCCCH DEILKHEMDATLAWLKERQGAVFDFDHEQELVNAVSAARDQNIIAGIQADRHNRRASIQG HHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHH CLEGQRAGASRLLVRDVDSRLVLIHPDPDQLLASPYDAVGLNIPLYSLRSMGKDWLQRPT HHHHHHCCCHHHHEEECCCCEEEECCCHHHHHCCCCCCCCCCCHHHHHHHCCHHHHCCCC DAPWRVRRLDESDAGDQAESNRPLYRWVDVHDSKELAQSAIIVVHPALAGYSAHEGFSPE CCCHHHHCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHCEEEEEECHHHCCCCCCCCCCC TGNLPFISTLPPARPLIDRPRSSLYVETYAEHIQRVLDAFQELVLPELRFAASALECAAG CCCCCEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC WSPGSVLRAAWLACLFHDVGKLSKGWQQWAHAYQQAIGQPVAKTIALAHTTFDFQNPTHR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEECCCCCHHH QAEREVSRSTPRPRHAAEGALAVAQILAGAFNISHEKELVQAILTAIARHHAPFVQDCQA HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHH FSLVSEAGNLIQNTLQFLPEEVNYSLNINDLWVNSHHHQQFAELLIKPTSRYGWIAYTLL HHHHHHHHHHHHHHHHHCHHHCCCEECEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHH ARALRRADQRGTEMGAGQTLP HHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MQLYPYQQRVKDIILAGENVVLQAPTGAGKTRAALVPFIEGFFDRPDTTPRKCLYVTPMR CCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECHHH VLANQFYAEYRELAARYQRLHGRQLDVRIQTGEQPEDRRFEGDLIFCTVDQFLSSYLMMP HHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHCCC YSLPYRLANVNAGALAGAYLVFDEFHLFDPDAALPTILHVLRQLHGLAPFMLMTATFSSA CCCCEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH MLQSLATLLQPAQVVTLSAAEIAAINTRGGQPARQRVWQVADQPLQAAAVLAHHQHASLV HHHHHHHHHCCCHHEEEEHHHEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCEE ICNTVRRAREVYAELKQQAPPETEVLLLHSQFLPDDRRQIEAKLRSRLGVSSQRQQANLI HHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCHHHHHHHHHHHHCCCCCCCCCCCEE VVATQVVEVGVDISVEVLHTELAPPASLIQRAGRCARYPGDTGTVIVYPVETYVPYAFKP EEEEHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCEEEEEHHHCCCCCCCH DEILKHEMDATLAWLKERQGAVFDFDHEQELVNAVSAARDQNIIAGIQADRHNRRASIQG HHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHH CLEGQRAGASRLLVRDVDSRLVLIHPDPDQLLASPYDAVGLNIPLYSLRSMGKDWLQRPT HHHHHHCCCHHHHEEECCCCEEEECCCHHHHHCCCCCCCCCCCHHHHHHHCCHHHHCCCC DAPWRVRRLDESDAGDQAESNRPLYRWVDVHDSKELAQSAIIVVHPALAGYSAHEGFSPE CCCHHHHCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHCEEEEEECHHHCCCCCCCCCCC TGNLPFISTLPPARPLIDRPRSSLYVETYAEHIQRVLDAFQELVLPELRFAASALECAAG CCCCCEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC WSPGSVLRAAWLACLFHDVGKLSKGWQQWAHAYQQAIGQPVAKTIALAHTTFDFQNPTHR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEECCCCCHHH QAEREVSRSTPRPRHAAEGALAVAQILAGAFNISHEKELVQAILTAIARHHAPFVQDCQA HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHH FSLVSEAGNLIQNTLQFLPEEVNYSLNINDLWVNSHHHQQFAELLIKPTSRYGWIAYTLL HHHHHHHHHHHHHHHHHCHHHCCCEECEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHH ARALRRADQRGTEMGAGQTLP HHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]