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The map label for this gene is trbF [H]

Identifier: 222109216

GI number: 222109216

Start: 120719

End: 121384

Strand: Reverse

Name: trbF [H]

Synonym: Avi_9651

Alternate gene names: 222109216

Gene position: 121384-120719 (Counterclockwise)

Preceding gene: 222109217

Following gene: 222109215

Centisome position: 93.06

GC content: 59.31

Gene sequence:

>666_bases
ATGGCCAAAAAGCTGAAGCATTTCGACAACCCGTATCTGGCGGCGCGTCACGAATGGAATGAGCGCATGGGCGGCGCCAA
CCGCGCAGCCAGAGCATGGATGACCGTCGGATCGGTTTCGCTGGTGATGGCGACGGTGGGTTTCGGCTTCGCGCTCTATC
AGGCCAGCCAGGTCAAGCTTGTCCCCTATATCGTGCAGGTCGACACGCTCGGAAATTCTGTTACGGGCGGGTTCCCGGCA
CAGATCGAATATGCCGACGAGCGCGTCGTTCGCAACATGCTCGGCCAGTTCGTTTATAACTTCCGATCGATCACGCCGGA
TAATGTGGTCCAGAAGGGCTATATCGACCGCACCTATGCGATGCTTCGGCGCACTGACCCCTCCACGGAAAAGGTCAACA
ACTGGTTCCGGAATAACTCGCCCTTCGATCGCGCCCGGACAGTGACGGTGTCCGTCGAGATCAACAACATCGTGGCCCTC
TCCAACCAGTCGTACCAGATCGACTGGACTGAGATCGAGCGCGATCGGGCGGGCAAGGAACTGCGGACCCGGCGATGGCG
CGGGATCGCCACCGTGACCCTGTCGCCGCCCCAGGACGAAGCTATCATTCGCCTCAACCCGATCGGTCTTTACCTCAAGG
ACTTCGATTGGACGGCCCAACTTTAA

Upstream 100 bases:

>100_bases
TCGGGCGCGGGCGGCCCATCGAGGTCGATGGGACTGCGCAACCACAAAACATCGAAATAGGCGGCATGGCTCGCAACTTG
TCAGGAAACAGGATCAGGCC

Downstream 100 bases:

>100_bases
GACGCTCGCGGAGAGACTATGTTCAAATTGACGAAATTGCGTGCGAGCGTTGTGACCGCACTGGTCCTTTTGACTGCCGC
GCCCACCCTGGGCGGTGCTG

Product: conjugal transfer protein TrbF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MAKKLKHFDNPYLAARHEWNERMGGANRAARAWMTVGSVSLVMATVGFGFALYQASQVKLVPYIVQVDTLGNSVTGGFPA
QIEYADERVVRNMLGQFVYNFRSITPDNVVQKGYIDRTYAMLRRTDPSTEKVNNWFRNNSPFDRARTVTVSVEINNIVAL
SNQSYQIDWTEIERDRAGKELRTRRWRGIATVTLSPPQDEAIIRLNPIGLYLKDFDWTAQL

Sequences:

>Translated_221_residues
MAKKLKHFDNPYLAARHEWNERMGGANRAARAWMTVGSVSLVMATVGFGFALYQASQVKLVPYIVQVDTLGNSVTGGFPA
QIEYADERVVRNMLGQFVYNFRSITPDNVVQKGYIDRTYAMLRRTDPSTEKVNNWFRNNSPFDRARTVTVSVEINNIVAL
SNQSYQIDWTEIERDRAGKELRTRRWRGIATVTLSPPQDEAIIRLNPIGLYLKDFDWTAQL
>Mature_220_residues
AKKLKHFDNPYLAARHEWNERMGGANRAARAWMTVGSVSLVMATVGFGFALYQASQVKLVPYIVQVDTLGNSVTGGFPAQ
IEYADERVVRNMLGQFVYNFRSITPDNVVQKGYIDRTYAMLRRTDPSTEKVNNWFRNNSPFDRARTVTVSVEINNIVALS
NQSYQIDWTEIERDRAGKELRTRRWRGIATVTLSPPQDEAIIRLNPIGLYLKDFDWTAQL

Specific function: Unknown

COG id: COG3701

COG function: function code U; Type IV secretory pathway, TrbF components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 25283; Mature: 25152

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKLKHFDNPYLAARHEWNERMGGANRAARAWMTVGSVSLVMATVGFGFALYQASQVKL
CCCCCCCCCCCCEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEHCCCCEEE
VPYIVQVDTLGNSVTGGFPAQIEYADERVVRNMLGQFVYNFRSITPDNVVQKGYIDRTYA
EEEEEEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHH
MLRRTDPSTEKVNNWFRNNSPFDRARTVTVSVEINNIVALSNQSYQIDWTEIERDRAGKE
HHHCCCCCHHHHHHHHCCCCCCCCEEEEEEEEEECEEEEECCCCEEEEHHHHHHHHCCHH
LRTRRWRGIATVTLSPPQDEAIIRLNPIGLYLKDFDWTAQL
HHHHHCCCEEEEEECCCCCCEEEEEECCEEEEECCCEEECC
>Mature Secondary Structure 
AKKLKHFDNPYLAARHEWNERMGGANRAARAWMTVGSVSLVMATVGFGFALYQASQVKL
CCCCCCCCCCCEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEHCCCCEEE
VPYIVQVDTLGNSVTGGFPAQIEYADERVVRNMLGQFVYNFRSITPDNVVQKGYIDRTYA
EEEEEEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHH
MLRRTDPSTEKVNNWFRNNSPFDRARTVTVSVEINNIVALSNQSYQIDWTEIERDRAGKE
HHHCCCCCHHHHHHHHCCCCCCCCEEEEEEEEEECEEEEECCCCEEEEHHHHHHHHCCHH
LRTRRWRGIATVTLSPPQDEAIIRLNPIGLYLKDFDWTAQL
HHHHHCCCEEEEEECCCCCCEEEEEECCEEEEECCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]