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The map label for this gene is trbL [H]

Identifier: 222109217

GI number: 222109217

Start: 121425

End: 122531

Strand: Reverse

Name: trbL [H]

Synonym: Avi_9653

Alternate gene names: 222109217

Gene position: 122531-121425 (Counterclockwise)

Preceding gene: 222109218

Following gene: 222109216

Centisome position: 93.94

GC content: 59.71

Gene sequence:

>1107_bases
ATGCGTGCAGCACTGGTTTTGAGATTGGCGCCTTTCGCCATCGTCGCACTCGCCGCGGTGGAACCCGCCCTGGCAGCGGA
TGGATCGATCCTTACAAACCTGGAAAACAATGTCCGCTCGGCCACTCAAGGGTGGCAAGACACCGTCATGAATGCGGCAA
GGTCACTGTTCTGGATCCTGGCGGGAATAGAATTTGGTATTGCCGCCGTGTGGTTCGCCATTGCAGCGCCATCGCTCGAT
ACGTGGGTCGCAGAGCTGATACGGCGTATTATCTTCATCGGCTTTTTCCTGTTTGTCCTGCAGCAGGGACCCGACTTCGC
GAAAGCTGTCGTCGACAGTCTGTTTCAGCTGGGGGCGAACGGCGGGACGGCTTCGCCAGCGGATGTCTTCAATGCCGGCA
TCAAGGTGGCGAGCACCCTGTCGGAAAAGGTCAAGTTCGGCATTTTCGAAGACAACGCAATGGCGATTGGCATCATCATC
GCCATGATTGTCGTGGTGATCTCTTTCTCGCTCGTGGCCGCGATTTTCGTTTCGGTGCTGGTGGAGATGTATGTCGGCCT
GCTCGCCGGCATGATCATGCTCGGACTCGGCGGGTCGAGCTTCACCAAGGACTTCGCGATCAAATATCTCGTCTATGCCT
TCTCGGTGGGCATGAAGCTGATGGCGCTCGTGATGATCGCGCGCATCGGCTCGGAGATCCTGATCGGCCTTTCGAACGAT
GCCAACACTGGAGAAGAACTGCTTGCGAGCCTCGTCATCGCGGGCCTGTCCGTCGTCATCTTCATGATTGCGATCTACGT
GCCGAATATCATCCAGGGCGTCGTACAGGGCGTGTCGGTCAGCAGCGGCATGGAAGCCATGAGATCCAGCGCACAGGTCA
CTGCTTTTGCGGCTTCGACGGTCGCGGGTGTCGGCGCTGGCGTCGCAGCGGCAGGTACTGCCAAGGCCGCCGGCGCTGGC
ATTCTGGGTCAGGCCTCCGCGGGCGTGAGGGCAGGCGGCTCGGCTTTAGCCGGAACGGCAGCAAAAGCCGCCATGGGTTC
GCATGGCTCGGGCGCGGGCGGCCCATCGAGGTCGATGGGACTGCGCAACCACAAAACATCGAAATAG

Upstream 100 bases:

>100_bases
GCCGAGCGCACGCGCAAACTGATGAACTCCAACCCGGATGATTATCCGACGACCGGCGGGCAAAAAATGGCCCCCCGTTG
GTGATCTGAAAGGTTTTCCC

Downstream 100 bases:

>100_bases
GCGGCATGGCTCGCAACTTGTCAGGAAACAGGATCAGGCCATGGCCAAAAAGCTGAAGCATTTCGACAACCCGTATCTGG
CGGCGCGTCACGAATGGAAT

Product: conjugal transfer protein TrbL

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MRAALVLRLAPFAIVALAAVEPALAADGSILTNLENNVRSATQGWQDTVMNAARSLFWILAGIEFGIAAVWFAIAAPSLD
TWVAELIRRIIFIGFFLFVLQQGPDFAKAVVDSLFQLGANGGTASPADVFNAGIKVASTLSEKVKFGIFEDNAMAIGIII
AMIVVVISFSLVAAIFVSVLVEMYVGLLAGMIMLGLGGSSFTKDFAIKYLVYAFSVGMKLMALVMIARIGSEILIGLSND
ANTGEELLASLVIAGLSVVIFMIAIYVPNIIQGVVQGVSVSSGMEAMRSSAQVTAFAASTVAGVGAGVAAAGTAKAAGAG
ILGQASAGVRAGGSALAGTAAKAAMGSHGSGAGGPSRSMGLRNHKTSK

Sequences:

>Translated_368_residues
MRAALVLRLAPFAIVALAAVEPALAADGSILTNLENNVRSATQGWQDTVMNAARSLFWILAGIEFGIAAVWFAIAAPSLD
TWVAELIRRIIFIGFFLFVLQQGPDFAKAVVDSLFQLGANGGTASPADVFNAGIKVASTLSEKVKFGIFEDNAMAIGIII
AMIVVVISFSLVAAIFVSVLVEMYVGLLAGMIMLGLGGSSFTKDFAIKYLVYAFSVGMKLMALVMIARIGSEILIGLSND
ANTGEELLASLVIAGLSVVIFMIAIYVPNIIQGVVQGVSVSSGMEAMRSSAQVTAFAASTVAGVGAGVAAAGTAKAAGAG
ILGQASAGVRAGGSALAGTAAKAAMGSHGSGAGGPSRSMGLRNHKTSK
>Mature_368_residues
MRAALVLRLAPFAIVALAAVEPALAADGSILTNLENNVRSATQGWQDTVMNAARSLFWILAGIEFGIAAVWFAIAAPSLD
TWVAELIRRIIFIGFFLFVLQQGPDFAKAVVDSLFQLGANGGTASPADVFNAGIKVASTLSEKVKFGIFEDNAMAIGIII
AMIVVVISFSLVAAIFVSVLVEMYVGLLAGMIMLGLGGSSFTKDFAIKYLVYAFSVGMKLMALVMIARIGSEILIGLSND
ANTGEELLASLVIAGLSVVIFMIAIYVPNIIQGVVQGVSVSSGMEAMRSSAQVTAFAASTVAGVGAGVAAAGTAKAAGAG
ILGQASAGVRAGGSALAGTAAKAAMGSHGSGAGGPSRSMGLRNHKTSK

Specific function: Unknown

COG id: COG3846

COG function: function code U; Type IV secretory pathway, TrbL components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbL/virB6 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014150
- InterPro:   IPR007688 [H]

Pfam domain/function: PF04610 TrbL [H]

EC number: NA

Molecular weight: Translated: 37440; Mature: 37440

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAALVLRLAPFAIVALAAVEPALAADGSILTNLENNVRSATQGWQDTVMNAARSLFWIL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
AGIEFGIAAVWFAIAAPSLDTWVAELIRRIIFIGFFLFVLQQGPDFAKAVVDSLFQLGAN
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
GGTASPADVFNAGIKVASTLSEKVKFGIFEDNAMAIGIIIAMIVVVISFSLVAAIFVSVL
CCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEMYVGLLAGMIMLGLGGSSFTKDFAIKYLVYAFSVGMKLMALVMIARIGSEILIGLSND
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
ANTGEELLASLVIAGLSVVIFMIAIYVPNIIQGVVQGVSVSSGMEAMRSSAQVTAFAAST
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHH
VAGVGAGVAAAGTAKAAGAGILGQASAGVRAGGSALAGTAAKAAMGSHGSGAGGPSRSMG
HHHHCCCHHHCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
LRNHKTSK
CCCCCCCC
>Mature Secondary Structure
MRAALVLRLAPFAIVALAAVEPALAADGSILTNLENNVRSATQGWQDTVMNAARSLFWIL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
AGIEFGIAAVWFAIAAPSLDTWVAELIRRIIFIGFFLFVLQQGPDFAKAVVDSLFQLGAN
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
GGTASPADVFNAGIKVASTLSEKVKFGIFEDNAMAIGIIIAMIVVVISFSLVAAIFVSVL
CCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEMYVGLLAGMIMLGLGGSSFTKDFAIKYLVYAFSVGMKLMALVMIARIGSEILIGLSND
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
ANTGEELLASLVIAGLSVVIFMIAIYVPNIIQGVVQGVSVSSGMEAMRSSAQVTAFAAST
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHH
VAGVGAGVAAAGTAKAAGAGILGQASAGVRAGGSALAGTAAKAAMGSHGSGAGGPSRSMG
HHHHCCCHHHCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
LRNHKTSK
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]