Definition | Agrobacterium vitis S4 plasmid pAtS4b, complete sequence. |
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Accession | NC_011991 |
Length | 130,435 |
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The map label for this gene is 222109160
Identifier: 222109160
GI number: 222109160
Start: 49570
End: 50034
Strand: Direct
Name: 222109160
Synonym: Avi_9555
Alternate gene names: NA
Gene position: 49570-50034 (Clockwise)
Preceding gene: 222109159
Following gene: 222109161
Centisome position: 38.0
GC content: 65.16
Gene sequence:
>465_bases ATGATCAGGCCCACTGTTGAGACGGTCGAGCTACCCCCTCCTCGATATACAGGGGCGGGGTCCGGCCGAAGCGCAGACGA TTGTGTTGTGACTGTAACGGCGAACCTGCGAGCGCAGCTGTCGCGGATGGAGGCGGCGCGCCGGCAGACTCAGCACCAGC TCGACATGATCGATCGGCAGATCACGCGCAAGATGACGGCCATCATTCCGCTGCTCGGCAAGCGCCGGTCTAGGGTCCAG AGGGGCCGGGCGCCAGACCCCGGCGCCTTTCTTGATCGGTACCGCCGGAACCTTGCGGCGCTGACATCCGAGCGCCAGCC GGAGATCGACGCGCTCGCCCGGAAGCTGGCGCGTCAGGACGCCGCCATCACGGTGATGCAGGCGCGTCTGGTTGAGAACA TCGACGTGCGCCGCGATCCGCCTGCAGGTTGTTCGGCAATTTACCAAAGCGAGTTGCCACGATGA
Upstream 100 bases:
>100_bases CTGAAGCATGGCTCAAACGTCACGGCTACCCGAACGCTGTCCTGGACGAGGTGACCGCCAACGAGGTCGCGGCCGACGTT ATCGAGGGGAGGGCGGCGGC
Downstream 100 bases:
>100_bases GCACGATCGGAGATCTGGAACGAAGGGCTGGCATCGGCCCTTCGCGTGAAGAGCGAGCGGCCTTCTGGCTCCGCTTTCGT CACCTGGACGGCATCGCATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 154; Mature: 154
Protein sequence:
>154_residues MIRPTVETVELPPPRYTGAGSGRSADDCVVTVTANLRAQLSRMEAARRQTQHQLDMIDRQITRKMTAIIPLLGKRRSRVQ RGRAPDPGAFLDRYRRNLAALTSERQPEIDALARKLARQDAAITVMQARLVENIDVRRDPPAGCSAIYQSELPR
Sequences:
>Translated_154_residues MIRPTVETVELPPPRYTGAGSGRSADDCVVTVTANLRAQLSRMEAARRQTQHQLDMIDRQITRKMTAIIPLLGKRRSRVQ RGRAPDPGAFLDRYRRNLAALTSERQPEIDALARKLARQDAAITVMQARLVENIDVRRDPPAGCSAIYQSELPR >Mature_154_residues MIRPTVETVELPPPRYTGAGSGRSADDCVVTVTANLRAQLSRMEAARRQTQHQLDMIDRQITRKMTAIIPLLGKRRSRVQ RGRAPDPGAFLDRYRRNLAALTSERQPEIDALARKLARQDAAITVMQARLVENIDVRRDPPAGCSAIYQSELPR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17286; Mature: 17286
Theoretical pI: Translated: 11.40; Mature: 11.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRPTVETVELPPPRYTGAGSGRSADDCVVTVTANLRAQLSRMEAARRQTQHQLDMIDRQ CCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH ITRKMTAIIPLLGKRRSRVQRGRAPDPGAFLDRYRRNLAALTSERQPEIDALARKLARQD HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH AAITVMQARLVENIDVRRDPPAGCSAIYQSELPR HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC >Mature Secondary Structure MIRPTVETVELPPPRYTGAGSGRSADDCVVTVTANLRAQLSRMEAARRQTQHQLDMIDRQ CCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH ITRKMTAIIPLLGKRRSRVQRGRAPDPGAFLDRYRRNLAALTSERQPEIDALARKLARQD HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH AAITVMQARLVENIDVRRDPPAGCSAIYQSELPR HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA