Click here to switch to the map view.

The map label for this gene is yabJ [H]

Identifier: 220932924

GI number: 220932924

Start: 2267037

End: 2267414

Strand: Direct

Name: yabJ [H]

Synonym: Hore_20920

Alternate gene names: 220932924

Gene position: 2267037-2267414 (Clockwise)

Preceding gene: 220932923

Following gene: 220932927

Centisome position: 87.93

GC content: 40.74

Gene sequence:

>378_bases
ATGGAAAAAACAAAAATTAATACCACCAAAAGTCCAGCTGCAATTGGACCTTACTCCCAGGCTATAAAAGTGGGGAACAT
GATCTTCACCAGTGGTCAGATTCCCTTTACTCCTGAAGGAGAACTGGTTAGTGAAGATGTCCAGGAACAGGCCCGCCAGT
CCCTTACAAACATAAAAAATATCCTCGAAGAAGCAGGCAGCAGTATGGACAAAGTAATAAAATGCACTGTTTTTATTGAT
GATATTAACGATTTTGGCCTGGTTAATGAAGTTTACCAGGAATTTTTCAATGAACCTTACCCTGCCAGAAGCTGTGTTGA
AGTAGCCCACTTACCAAAAGATGTTAAGGTTGAGATTGAAGCTATCGCCCTTGTTTAG

Upstream 100 bases:

>100_bases
TTTTTTTTAATGTTAAATGTATAATTATAATAGATATATTACTATAATAGATTTATATATAACTTAACAGGACTTTAACT
TTACTTAGGAGGGTGTAAAT

Downstream 100 bases:

>100_bases
TACGAGAAGGTTAAAGATATTCTTCTATAAAAGATTTACATCTTTTGATAATACCTACATCTTTTAATAATATGGATCTT
TGATTTTACTAATAAGTTGA

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MEKTKINTTKSPAAIGPYSQAIKVGNMIFTSGQIPFTPEGELVSEDVQEQARQSLTNIKNILEEAGSSMDKVIKCTVFID
DINDFGLVNEVYQEFFNEPYPARSCVEVAHLPKDVKVEIEAIALV

Sequences:

>Translated_125_residues
MEKTKINTTKSPAAIGPYSQAIKVGNMIFTSGQIPFTPEGELVSEDVQEQARQSLTNIKNILEEAGSSMDKVIKCTVFID
DINDFGLVNEVYQEFFNEPYPARSCVEVAHLPKDVKVEIEAIALV
>Mature_125_residues
MEKTKINTTKSPAAIGPYSQAIKVGNMIFTSGQIPFTPEGELVSEDVQEQARQSLTNIKNILEEAGSSMDKVIKCTVFID
DINDFGLVNEVYQEFFNEPYPARSCVEVAHLPKDVKVEIEAIALV

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=120, Percent_Identity=50, Blast_Score=125, Evalue=6e-30,
Organism=Escherichia coli, GI87082213, Length=125, Percent_Identity=56.8, Blast_Score=147, Evalue=3e-37,
Organism=Escherichia coli, GI87082396, Length=127, Percent_Identity=58.2677165354331, Blast_Score=146, Evalue=5e-37,
Organism=Escherichia coli, GI1787245, Length=126, Percent_Identity=30.952380952381, Blast_Score=73, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI25148896, Length=119, Percent_Identity=47.0588235294118, Blast_Score=122, Evalue=5e-29,
Organism=Caenorhabditis elegans, GI71982075, Length=119, Percent_Identity=47.0588235294118, Blast_Score=122, Evalue=5e-29,
Organism=Caenorhabditis elegans, GI71982068, Length=119, Percent_Identity=47.0588235294118, Blast_Score=121, Evalue=7e-29,
Organism=Saccharomyces cerevisiae, GI6322138, Length=121, Percent_Identity=44.6280991735537, Blast_Score=116, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=51.9607843137255, Blast_Score=113, Evalue=8e-27,
Organism=Drosophila melanogaster, GI19921376, Length=120, Percent_Identity=45.8333333333333, Blast_Score=109, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13823; Mature: 13823

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKTKINTTKSPAAIGPYSQAIKVGNMIFTSGQIPFTPEGELVSEDVQEQARQSLTNIKN
CCCCCCCCCCCCCCCCCHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
ILEEAGSSMDKVIKCTVFIDDINDFGLVNEVYQEFFNEPYPARSCVEVAHLPKDVKVEIE
HHHHHCCHHHHHEEEEEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEE
AIALV
EEEEC
>Mature Secondary Structure
MEKTKINTTKSPAAIGPYSQAIKVGNMIFTSGQIPFTPEGELVSEDVQEQARQSLTNIKN
CCCCCCCCCCCCCCCCCHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
ILEEAGSSMDKVIKCTVFIDDINDFGLVNEVYQEFFNEPYPARSCVEVAHLPKDVKVEIE
HHHHHCCHHHHHEEEEEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEE
AIALV
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 10368157; 14594850; 10557275 [H]