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The map label for this gene is 220932433

Identifier: 220932433

GI number: 220932433

Start: 1710816

End: 1711613

Strand: Direct

Name: 220932433

Synonym: Hore_15970

Alternate gene names: NA

Gene position: 1710816-1711613 (Clockwise)

Preceding gene: 220932432

Following gene: 220932436

Centisome position: 66.36

GC content: 43.61

Gene sequence:

>798_bases
ATGGTTAATTTAAAACGCTCACTGGCCCCAATAACCCCTGATGCCTGGGAGTTTATTGATAAAGAGGCCAGAAGGGTATT
AAAACTTAAATTATCAGCCCGTAAAGCAGTTGATTTTGTCGGTCCTAAAGGAATCAAATATGCAGCTGTTAACACCGGTC
GCAGAACTGCCCTGGAAGATAAAGCGGAAGGAGCCAGCATATTTCAAAGACAGGTTCTACCCCTTGTAGAGGTTGAAATA
CCTTTCAGACTTCATCTGGAAGAGCTGGAGGCCTTTGTCCGCGGAGCAGAAGATGTCAATATCGATAATTTACTTGAATC
AGCAAATGAACTGGCACGCATTGAGAATAAAGCTATTTTCTTTGGAATGGATTCAGCGGGGATAAGTGGATTAGTTAATT
CTTCCGGCCAGACCCTTGATACACCTGCAACCGGGCTTATATCATCTGTTGCTGAAGGTATTAACAATCTGGTAAAGGCA
GGTGTCAATGGCCCCTATACACTGTTGCTGGGACCTGAACTTTACCACTCCCTGTATACCAGGAATGACAGGGGTTATCC
CCTTGAAAAAAGAATCAGTGATATAATCGGTGGTGACATTCTTTTTACACCTGACCTGGAAGGTTATGGCCTTCTTCTAT
CAAAACGGGGAGGGGATTTTGAACTGATAGTCGGTCAGGATATAGCCATTGGCTTTTCCGGTCAGTTCGGTGATGAATTA
GAATTTTTCTTACTGGAATCCTTTACCTTCAGGGTTAATACCCCGGAAGCAGCGGTAGTTTTAAAGGCAACTGACTAA

Upstream 100 bases:

>100_bases
TAGCTTCACTGGAAGAAGAGGAAGAAAACCAGGAGAACACAGAAACCACCGATGGTTCTCTGGGCCTCAGGAATACTAAA
TAAGGAGGGAATACAAACTT

Downstream 100 bases:

>100_bases
AGGTTAATCATATATATGTATCGTTACATATATAACATTAAACATATATAACATTTAGAACAAACTTAATATAAGTTTAA
TTTATGTATGAACACAAAAA

Product: Linocin_M18 bacteriocin protein

Products: NA

Alternate protein names: Thermotoga bacteriocin [H]

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MVNLKRSLAPITPDAWEFIDKEARRVLKLKLSARKAVDFVGPKGIKYAAVNTGRRTALEDKAEGASIFQRQVLPLVEVEI
PFRLHLEELEAFVRGAEDVNIDNLLESANELARIENKAIFFGMDSAGISGLVNSSGQTLDTPATGLISSVAEGINNLVKA
GVNGPYTLLLGPELYHSLYTRNDRGYPLEKRISDIIGGDILFTPDLEGYGLLLSKRGGDFELIVGQDIAIGFSGQFGDEL
EFFLLESFTFRVNTPEAAVVLKATD

Sequences:

>Translated_265_residues
MVNLKRSLAPITPDAWEFIDKEARRVLKLKLSARKAVDFVGPKGIKYAAVNTGRRTALEDKAEGASIFQRQVLPLVEVEI
PFRLHLEELEAFVRGAEDVNIDNLLESANELARIENKAIFFGMDSAGISGLVNSSGQTLDTPATGLISSVAEGINNLVKA
GVNGPYTLLLGPELYHSLYTRNDRGYPLEKRISDIIGGDILFTPDLEGYGLLLSKRGGDFELIVGQDIAIGFSGQFGDEL
EFFLLESFTFRVNTPEAAVVLKATD
>Mature_265_residues
MVNLKRSLAPITPDAWEFIDKEARRVLKLKLSARKAVDFVGPKGIKYAAVNTGRRTALEDKAEGASIFQRQVLPLVEVEI
PFRLHLEELEAFVRGAEDVNIDNLLESANELARIENKAIFFGMDSAGISGLVNSSGQTLDTPATGLISSVAEGINNLVKA
GVNGPYTLLLGPELYHSLYTRNDRGYPLEKRISDIIGGDILFTPDLEGYGLLLSKRGGDFELIVGQDIAIGFSGQFGDEL
EFFLLESFTFRVNTPEAAVVLKATD

Specific function: Protease that exhibits activity toward chymotrypsin and trypsin substrates. May have antibacterial activity [H]

COG id: COG1659

COG function: function code S; Uncharacterized protein, linocin/CFP29 homolog

Gene ontology:

Cell location: Secreted (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U56 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007544 [H]

Pfam domain/function: PF04454 Linocin_M18 [H]

EC number: NA

Molecular weight: Translated: 28946; Mature: 28946

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNLKRSLAPITPDAWEFIDKEARRVLKLKLSARKAVDFVGPKGIKYAAVNTGRRTALED
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH
KAEGASIFQRQVLPLVEVEIPFRLHLEELEAFVRGAEDVNIDNLLESANELARIENKAIF
HCCHHHHHHHHCCCEEEEECCCEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEE
FGMDSAGISGLVNSSGQTLDTPATGLISSVAEGINNLVKAGVNGPYTLLLGPELYHSLYT
EECCCCCCHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHH
RNDRGYPLEKRISDIIGGDILFTPDLEGYGLLLSKRGGDFELIVGQDIAIGFSGQFGDEL
CCCCCCCHHHHHHHHHCCCEEECCCCCCCEEEEECCCCCEEEEECCEEEEEECCCCCCHH
EFFLLESFTFRVNTPEAAVVLKATD
HHEEEEEEEEEECCCCEEEEEEECC
>Mature Secondary Structure
MVNLKRSLAPITPDAWEFIDKEARRVLKLKLSARKAVDFVGPKGIKYAAVNTGRRTALED
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH
KAEGASIFQRQVLPLVEVEIPFRLHLEELEAFVRGAEDVNIDNLLESANELARIENKAIF
HCCHHHHHHHHCCCEEEEECCCEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEE
FGMDSAGISGLVNSSGQTLDTPATGLISSVAEGINNLVKAGVNGPYTLLLGPELYHSLYT
EECCCCCCHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHH
RNDRGYPLEKRISDIIGGDILFTPDLEGYGLLLSKRGGDFELIVGQDIAIGFSGQFGDEL
CCCCCCCHHHHHHHHHCCCEEECCCCCCCEEEEECCCCCEEEEECCEEEEEECCCCCCHH
EFFLLESFTFRVNTPEAAVVLKATD
HHEEEEEEEEEECCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]