Click here to switch to the map view.

The map label for this gene is 220932436

Identifier: 220932436

GI number: 220932436

Start: 1715741

End: 1717369

Strand: Direct

Name: 220932436

Synonym: Hore_16000

Alternate gene names: NA

Gene position: 1715741-1717369 (Clockwise)

Preceding gene: 220932433

Following gene: 220932437

Centisome position: 66.55

GC content: 39.47

Gene sequence:

>1629_bases
TTGTCTAAAGGATTTTTAGCTCTAATTTTACACGCCCATTTACCTTTTGTTCGCCATACTGATGGTGAAGGAAAACTTGC
TGAAGACTGGTTATATGAAGCTATAACAGAAACTTATATACCCCTTTTAAATATAATGGAAAGGCTTCATAAAAAAGGGG
TTAATTTTCGTTTAACCCTGAATATTAGCCCCTCACTGGCTTCTATGCTGGATGATGAACTCTTACAGAAGCGCTACCTC
AACCACCTCGAAAACCTGATAGAACTGAGCGAAAAGGAAATAGAAAGAAACAGTAACACACCCCGGGTTAAAAAACTGGC
TGAAATGTATAATTACCTTTTCAAAGAGGCCCGGTATGTTTTTCATGAAAAATATAAAAATAATATTTTAAAAGGTTTTA
AAAAGTTTCAAGAGCTAAACAGGCTGGAAATAATTACTTCAGCAGCAACCCATGGTTACCTGCCTTTGATTTTAACCGAA
AAAGCCGTCAATGCCCAGGTGGCAACAGGTATAAATACCTATGAGCGTATTTTTGGACAAAAACCAAAGGGGTTCTGGTT
GCCGGAATGTGCCTTCAAACCTGGAATTGATGCCATACTGGCCGATAAAGGTATAAGGTATTTTATTAGTTCTACCCATG
GCATCCTTTATGCAACACCAAGACCCCGTTATGGGGTATATTCACCTGTTTATACACCAAATGGAGTTGCTGCCTTTGGT
AGAGATGTAGAAACCTCAAAACAGGTCTGGAGTGCCAACGAAGGTTACCCCGGTGACTTCGACTACCGGGAATTTTACCG
GGATATCGGTTTTGACCTTGATTATGATTACATAAAAAAATACCTCCCTGATGGTATCAGGAAACATGTCGGAATTAAAT
ACCATAGAATAACGGGCAAAAGTGATTATAAAGAGCTTTATGACCCCGACAGGGCCCGTGAAAAAGCAGCAGAACATGCC
GCCAACTTTATATTTAATCGCCAGCACCAGATTAAATACCTGAGTCAGGTTATGGATAGAAAACCTGTAGTTGTGGCCCC
CTATGATGCTGAATTGTTTGGACACTGGTGGTTTGAGGGGCCACAGTGGCTTGAATTCCTTTTAGAAAAAATACACTATG
ATCAGGAGGATTTTACAACAATTACTCCCTCTGAATACCTTGATTTATACCCCCGCAACCAGGTCGCCATGCCCGCTGAA
TCAAGCTGGGGTTATAAAGGATATCATGAAGTCTGGCTCAATGGCAGTAATGACTGGGTTTACCGCCATTTACACGAGGC
TGAATTAAAAATGATCACCCTTGCCGATAAATATAACCACTTAGAAGATAAAGATAATATATTTTACCGGGCCCTGAACC
AGATGGCCAGAGAACTCCTTCTGGCCCAGAGCAGTGACTGGGCCTTTATTATAAAGACCAATACCATGGTCGAATATGCA
ATTATGAGAACAAAAAAACACCTTTTTAATTTCAGGAAACTCTCAAACCAGGTAGAAGGTAAAAATCTTGATAAAGATTT
TCTCAGTAACCTGGAAAAAAGTAACAATATTTTTCCCGAAATTGATTTCAAAATATATAACCAGAATATTAATAAAGGAT
GGGATCTAAAGGAGGGTATTTCAGGATGA

Upstream 100 bases:

>100_bases
ATTAAAGGACAGTTAGTGCATAAATAAAGACCGGAACAAACATATTAATAATAAATGCACCCAAAAAAGGAACTGAACTT
TAAGAAATGGAGGAATAAAG

Downstream 100 bases:

>100_bases
TTAAAAATACTAATATTTTTTTATCTGAAGGGAAACTTAGAGAAAGGAGGTTTAGAATGATGGATATATACCTTAATATT
TTAATAATTTTATTCGCACT

Product: hypothetical protein

Products: NA

Alternate protein names: Glycoside Hydrolase Family Protein; Glycosyl Hydrolase Family; Glycosy Hydrolase Family Protein; Alpha-Amylase; (1-_4)-Alpha-D-Glucan Branching; Family; Glycogen Branching; Glycosyl Transferase/Glycoside Hydrolase-Like Protein; Glycosyl Hydrolase Family Protein

Number of amino acids: Translated: 542; Mature: 541

Protein sequence:

>542_residues
MSKGFLALILHAHLPFVRHTDGEGKLAEDWLYEAITETYIPLLNIMERLHKKGVNFRLTLNISPSLASMLDDELLQKRYL
NHLENLIELSEKEIERNSNTPRVKKLAEMYNYLFKEARYVFHEKYKNNILKGFKKFQELNRLEIITSAATHGYLPLILTE
KAVNAQVATGINTYERIFGQKPKGFWLPECAFKPGIDAILADKGIRYFISSTHGILYATPRPRYGVYSPVYTPNGVAAFG
RDVETSKQVWSANEGYPGDFDYREFYRDIGFDLDYDYIKKYLPDGIRKHVGIKYHRITGKSDYKELYDPDRAREKAAEHA
ANFIFNRQHQIKYLSQVMDRKPVVVAPYDAELFGHWWFEGPQWLEFLLEKIHYDQEDFTTITPSEYLDLYPRNQVAMPAE
SSWGYKGYHEVWLNGSNDWVYRHLHEAELKMITLADKYNHLEDKDNIFYRALNQMARELLLAQSSDWAFIIKTNTMVEYA
IMRTKKHLFNFRKLSNQVEGKNLDKDFLSNLEKSNNIFPEIDFKIYNQNINKGWDLKEGISG

Sequences:

>Translated_542_residues
MSKGFLALILHAHLPFVRHTDGEGKLAEDWLYEAITETYIPLLNIMERLHKKGVNFRLTLNISPSLASMLDDELLQKRYL
NHLENLIELSEKEIERNSNTPRVKKLAEMYNYLFKEARYVFHEKYKNNILKGFKKFQELNRLEIITSAATHGYLPLILTE
KAVNAQVATGINTYERIFGQKPKGFWLPECAFKPGIDAILADKGIRYFISSTHGILYATPRPRYGVYSPVYTPNGVAAFG
RDVETSKQVWSANEGYPGDFDYREFYRDIGFDLDYDYIKKYLPDGIRKHVGIKYHRITGKSDYKELYDPDRAREKAAEHA
ANFIFNRQHQIKYLSQVMDRKPVVVAPYDAELFGHWWFEGPQWLEFLLEKIHYDQEDFTTITPSEYLDLYPRNQVAMPAE
SSWGYKGYHEVWLNGSNDWVYRHLHEAELKMITLADKYNHLEDKDNIFYRALNQMARELLLAQSSDWAFIIKTNTMVEYA
IMRTKKHLFNFRKLSNQVEGKNLDKDFLSNLEKSNNIFPEIDFKIYNQNINKGWDLKEGISG
>Mature_541_residues
SKGFLALILHAHLPFVRHTDGEGKLAEDWLYEAITETYIPLLNIMERLHKKGVNFRLTLNISPSLASMLDDELLQKRYLN
HLENLIELSEKEIERNSNTPRVKKLAEMYNYLFKEARYVFHEKYKNNILKGFKKFQELNRLEIITSAATHGYLPLILTEK
AVNAQVATGINTYERIFGQKPKGFWLPECAFKPGIDAILADKGIRYFISSTHGILYATPRPRYGVYSPVYTPNGVAAFGR
DVETSKQVWSANEGYPGDFDYREFYRDIGFDLDYDYIKKYLPDGIRKHVGIKYHRITGKSDYKELYDPDRAREKAAEHAA
NFIFNRQHQIKYLSQVMDRKPVVVAPYDAELFGHWWFEGPQWLEFLLEKIHYDQEDFTTITPSEYLDLYPRNQVAMPAES
SWGYKGYHEVWLNGSNDWVYRHLHEAELKMITLADKYNHLEDKDNIFYRALNQMARELLLAQSSDWAFIIKTNTMVEYAI
MRTKKHLFNFRKLSNQVEGKNLDKDFLSNLEKSNNIFPEIDFKIYNQNINKGWDLKEGISG

Specific function: Unknown

COG id: COG1543

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 63597; Mature: 63466

Theoretical pI: Translated: 7.39; Mature: 7.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKGFLALILHAHLPFVRHTDGEGKLAEDWLYEAITETYIPLLNIMERLHKKGVNFRLTL
CCCCHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
NISPSLASMLDDELLQKRYLNHLENLIELSEKEIERNSNTPRVKKLAEMYNYLFKEARYV
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
FHEKYKNNILKGFKKFQELNRLEIITSAATHGYLPLILTEKAVNAQVATGINTYERIFGQ
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECHHHCCHHHHCCHHHHHHHCC
KPKGFWLPECAFKPGIDAILADKGIRYFISSTHGILYATPRPRYGVYSPVYTPNGVAAFG
CCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCHHHHC
RDVETSKQVWSANEGYPGDFDYREFYRDIGFDLDYDYIKKYLPDGIRKHVGIKYHRITGK
CCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCHHHHHHCCCEEEEECCC
SDYKELYDPDRAREKAAEHAANFIFNRQHQIKYLSQVMDRKPVVVAPYDAELFGHWWFEG
CHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCC
PQWLEFLLEKIHYDQEDFTTITPSEYLDLYPRNQVAMPAESSWGYKGYHEVWLNGSNDWV
HHHHHHHHHHHCCCCCCCCEECCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHH
YRHLHEAELKMITLADKYNHLEDKDNIFYRALNQMARELLLAQSSDWAFIIKTNTMVEYA
HHHHHHHHEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHH
IMRTKKHLFNFRKLSNQVEGKNLDKDFLSNLEKSNNIFPEIDFKIYNQNINKGWDLKEGI
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCC
SG
CC
>Mature Secondary Structure 
SKGFLALILHAHLPFVRHTDGEGKLAEDWLYEAITETYIPLLNIMERLHKKGVNFRLTL
CCCHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
NISPSLASMLDDELLQKRYLNHLENLIELSEKEIERNSNTPRVKKLAEMYNYLFKEARYV
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
FHEKYKNNILKGFKKFQELNRLEIITSAATHGYLPLILTEKAVNAQVATGINTYERIFGQ
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECHHHCCHHHHCCHHHHHHHCC
KPKGFWLPECAFKPGIDAILADKGIRYFISSTHGILYATPRPRYGVYSPVYTPNGVAAFG
CCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCHHHHC
RDVETSKQVWSANEGYPGDFDYREFYRDIGFDLDYDYIKKYLPDGIRKHVGIKYHRITGK
CCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCHHHHHHCCCEEEEECCC
SDYKELYDPDRAREKAAEHAANFIFNRQHQIKYLSQVMDRKPVVVAPYDAELFGHWWFEG
CHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCC
PQWLEFLLEKIHYDQEDFTTITPSEYLDLYPRNQVAMPAESSWGYKGYHEVWLNGSNDWV
HHHHHHHHHHHCCCCCCCCEECCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHH
YRHLHEAELKMITLADKYNHLEDKDNIFYRALNQMARELLLAQSSDWAFIIKTNTMVEYA
HHHHHHHHEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHH
IMRTKKHLFNFRKLSNQVEGKNLDKDFLSNLEKSNNIFPEIDFKIYNQNINKGWDLKEGI
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCC
SG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA