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The map label for this gene is radC [C]

Identifier: 220931910

GI number: 220931910

Start: 1157806

End: 1158528

Strand: Direct

Name: radC [C]

Synonym: Hore_10680

Alternate gene names: 220931910

Gene position: 1157806-1158528 (Clockwise)

Preceding gene: 220931909

Following gene: 220931911

Centisome position: 44.91

GC content: 33.33

Gene sequence:

>723_bases
ATGATAAACGTATACTGCTGGAGATGTGGTACCAAGGTCAGTAAGAAGGATATTCTGGGTTTAGGTCATTTTGACCAGCA
GATTGGTAAGTATCAGGGAAAGAAGTTTATTGCTTTTAAATGTCCCAAGTGTAAAAAAGCCAGATATCAAATACTCGATA
CTGACCTCTTTTCATTTCAAAAGAAGACTTCGCAAAAATTTAAGAATTCTCCCGGGGTAAATAATGAGGCTGGAATTGAC
ATAGATCAGGTTATTGATTTTTATAAAGTATTAAATGATATAGATACAGTAGATAACTTTCTTGAAAAATGTGAAATGGC
TTCTGATACAATTAGTACTGAACTGGATAAACCAATTGTTCAGCCTTTAGATGTTTATAATCTTTTCTGTGAATTGAATA
CAACTAATGACAAGAGACTGATGATTTTAACACTGGATGAAGATAATTATTTGATTACATGGGAATTTCTGGGTGAAGGC
ACTAATAAGCCAATTAAACTGGATCCGAAAACTATTTTTCACACCTCGTTTTTACTTGAAGAAAAGACTTCAGTTATAAT
TGCCGAAAACATGAATGATAATTTTACCAGACCATCCCAGAAAGATGTTCTGGTTACAAAACGACTGGTAAAAGCCGGCA
AAATTCTGGGAATTGATTTTCTTGATCATATTGTCATTGAGGCTGATGGATACCACAGTTATGATCAGTTAAATTTAATT
TAG

Upstream 100 bases:

>100_bases
GGAATTACACCTTTTAGAAAGAATTATGTATTAAATTAAGCAGGGAGAAATATAATGTAGTATATTAATTATGAAAACAG
GATAGAAGGGAGAGGAGATT

Downstream 100 bases:

>100_bases
AGTAATTATCTGACTTATAAAGGTTTTTTAAAAAAATATTAAAAAATATGATTACTTAAAACCTGTCTCTTCAGAGGCAG
GTTTTTTTAATGTGCAAAAA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MINVYCWRCGTKVSKKDILGLGHFDQQIGKYQGKKFIAFKCPKCKKARYQILDTDLFSFQKKTSQKFKNSPGVNNEAGID
IDQVIDFYKVLNDIDTVDNFLEKCEMASDTISTELDKPIVQPLDVYNLFCELNTTNDKRLMILTLDEDNYLITWEFLGEG
TNKPIKLDPKTIFHTSFLLEEKTSVIIAENMNDNFTRPSQKDVLVTKRLVKAGKILGIDFLDHIVIEADGYHSYDQLNLI

Sequences:

>Translated_240_residues
MINVYCWRCGTKVSKKDILGLGHFDQQIGKYQGKKFIAFKCPKCKKARYQILDTDLFSFQKKTSQKFKNSPGVNNEAGID
IDQVIDFYKVLNDIDTVDNFLEKCEMASDTISTELDKPIVQPLDVYNLFCELNTTNDKRLMILTLDEDNYLITWEFLGEG
TNKPIKLDPKTIFHTSFLLEEKTSVIIAENMNDNFTRPSQKDVLVTKRLVKAGKILGIDFLDHIVIEADGYHSYDQLNLI
>Mature_240_residues
MINVYCWRCGTKVSKKDILGLGHFDQQIGKYQGKKFIAFKCPKCKKARYQILDTDLFSFQKKTSQKFKNSPGVNNEAGID
IDQVIDFYKVLNDIDTVDNFLEKCEMASDTISTELDKPIVQPLDVYNLFCELNTTNDKRLMILTLDEDNYLITWEFLGEG
TNKPIKLDPKTIFHTSFLLEEKTSVIIAENMNDNFTRPSQKDVLVTKRLVKAGKILGIDFLDHIVIEADGYHSYDQLNLI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 27596; Mature: 27596

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINVYCWRCGTKVSKKDILGLGHFDQQIGKYQGKKFIAFKCPKCKKARYQILDTDLFSFQ
CCEEEEECCCCCCCHHHEEECCHHHHHHHHHCCCEEEEEECCCCCCCHHEEHHHHHHHHH
KKTSQKFKNSPGVNNEAGIDIDQVIDFYKVLNDIDTVDNFLEKCEMASDTISTELDKPIV
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHC
QPLDVYNLFCELNTTNDKRLMILTLDEDNYLITWEFLGEGTNKPIKLDPKTIFHTSFLLE
CHHCEEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCCCCEEECCHHHHHHHHHEE
EKTSVIIAENMNDNFTRPSQKDVLVTKRLVKAGKILGIDFLDHIVIEADGYHSYDQLNLI
CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEHHHHCEEEEECCCCCCCCCEECC
>Mature Secondary Structure
MINVYCWRCGTKVSKKDILGLGHFDQQIGKYQGKKFIAFKCPKCKKARYQILDTDLFSFQ
CCEEEEECCCCCCCHHHEEECCHHHHHHHHHCCCEEEEEECCCCCCCHHEEHHHHHHHHH
KKTSQKFKNSPGVNNEAGIDIDQVIDFYKVLNDIDTVDNFLEKCEMASDTISTELDKPIV
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHC
QPLDVYNLFCELNTTNDKRLMILTLDEDNYLITWEFLGEGTNKPIKLDPKTIFHTSFLLE
CHHCEEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCCCCEEECCHHHHHHHHHEE
EKTSVIIAENMNDNFTRPSQKDVLVTKRLVKAGKILGIDFLDHIVIEADGYHSYDQLNLI
CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEHHHHCEEEEECCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11932238 [H]