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The map label for this gene is xynD [H]

Identifier: 221230906

GI number: 221230906

Start: 3169193

End: 3170008

Strand: Reverse

Name: xynD [H]

Synonym: MLBr_02649

Alternate gene names: 221230906

Gene position: 3170008-3169193 (Counterclockwise)

Preceding gene: 221230910

Following gene: 221230904

Centisome position: 97.0

GC content: 56.86

Gene sequence:

>816_bases
GTGTCAGCGCTAAACCGGCGTAGCTTTTTGGGCGCGCTTGCCGTGTCCACTGTGACCGGCCTCGGCGCAGTACGCCTCGT
GGTCGGCCCGCAACCGCGAACATTCGTCCAAGCGCCGGTGGTTGCCGAGTTGACGCCGACTCCTAACGCCGCAGGTGTAT
TGCCGCCGCCACCAACGAGTGCACGCATTCCATTGCCTGGCGGTGGTGTGCTATCTAAGATCCCGGGTCGTGGCGATCTG
CTTGCTCTTACCGTCGACGACGGCGTCAATACCGAGGTAGTGCGTTCCTACGTGCAGTTTGTCAAAGACACCGACATACG
GCTGACGTTTTTCGTCAACGGAGTCTACGACTCCTGGACCGACAACATGTCGATGTTGCGACCGTTGGTGGAATCTGGCC
AGATCCAACTCGGCAACCACACTTGGTCTCACCCGGATCTGACAGCAATGACTAAAAGCGAGATAGCCACACAGCTTAAC
CGCAACGACGACTTCCTGAAGAAGAACTACGGTATCGCCGCGCAACCGTACTGGCGTCCACCGTATGCCAAGCACAACGC
CACTGTTGATGCGGTGGCGGTCGATCTCGGCTACACCGTTCCAACCTTATGGTCGGGTTCGCTGTCGGATTCCACGCTGA
TCACCGAGGATTACATCGTGAAGATGGCTGACCAGTATTTCACTCCGCAAGCCATCGTGATCGGACATCTCAACCACCTA
CCGGTTACCCACGTCTACCCGCAGCTCATCGACATCATCCGTTCACGACATCTTCGTACCGTCACCCTTAATGACGTATT
CCTTACAACCTCATAG

Upstream 100 bases:

>100_bases
CGGGCTTGTCTATCGTGTATCGCACCGCAAACCATCTCACAATGACCGGATTGGGTTTGCTGGATCTGTCATGGTGCATA
CGTGTGCTCGAGGCTTTGCT

Downstream 100 bases:

>100_bases
TTCTCAACAATATGCGATCTGCTTCCAGGATCATCGGAAACTGTTTGGTAAAACTGTGAGAGTGGAACTGTTCAGAATGC
CGCTAGCCCGGTTGTTTTGT

Product: hypothetical protein

Products: NA

Alternate protein names: Endo-1,4-beta-xylanase D; XYLD; Xylanase D; Acetylated xylan deacetylase [H]

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MSALNRRSFLGALAVSTVTGLGAVRLVVGPQPRTFVQAPVVAELTPTPNAAGVLPPPPTSARIPLPGGGVLSKIPGRGDL
LALTVDDGVNTEVVRSYVQFVKDTDIRLTFFVNGVYDSWTDNMSMLRPLVESGQIQLGNHTWSHPDLTAMTKSEIATQLN
RNDDFLKKNYGIAAQPYWRPPYAKHNATVDAVAVDLGYTVPTLWSGSLSDSTLITEDYIVKMADQYFTPQAIVIGHLNHL
PVTHVYPQLIDIIRSRHLRTVTLNDVFLTTS

Sequences:

>Translated_271_residues
MSALNRRSFLGALAVSTVTGLGAVRLVVGPQPRTFVQAPVVAELTPTPNAAGVLPPPPTSARIPLPGGGVLSKIPGRGDL
LALTVDDGVNTEVVRSYVQFVKDTDIRLTFFVNGVYDSWTDNMSMLRPLVESGQIQLGNHTWSHPDLTAMTKSEIATQLN
RNDDFLKKNYGIAAQPYWRPPYAKHNATVDAVAVDLGYTVPTLWSGSLSDSTLITEDYIVKMADQYFTPQAIVIGHLNHL
PVTHVYPQLIDIIRSRHLRTVTLNDVFLTTS
>Mature_270_residues
SALNRRSFLGALAVSTVTGLGAVRLVVGPQPRTFVQAPVVAELTPTPNAAGVLPPPPTSARIPLPGGGVLSKIPGRGDLL
ALTVDDGVNTEVVRSYVQFVKDTDIRLTFFVNGVYDSWTDNMSMLRPLVESGQIQLGNHTWSHPDLTAMTKSEIATQLNR
NDDFLKKNYGIAAQPYWRPPYAKHNATVDAVAVDLGYTVPTLWSGSLSDSTLITEDYIVKMADQYFTPQAIVIGHLNHLP
VTHVYPQLIDIIRSRHLRTVTLNDVFLTTS

Specific function: Endo-acting xylanase which displays no detectable activity against polysaccharides other than xylan. Hydrolyzes glucosidic bonds with retention of anomeric configuration [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 polysaccharide deacetylase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008965
- InterPro:   IPR012291
- InterPro:   IPR001919
- InterPro:   IPR008985
- InterPro:   IPR011330
- InterPro:   IPR001137
- InterPro:   IPR013319
- InterPro:   IPR018208
- InterPro:   IPR002509
- InterPro:   IPR006311 [H]

Pfam domain/function: PF00553 CBM_2; PF00457 Glyco_hydro_11; PF01522 Polysacc_deac_1 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 29586; Mature: 29455

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSALNRRSFLGALAVSTVTGLGAVRLVVGPQPRTFVQAPVVAELTPTPNAAGVLPPPPTS
CCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCEEEEECCCCCCCCCCCCCCCC
ARIPLPGGGVLSKIPGRGDLLALTVDDGVNTEVVRSYVQFVKDTDIRLTFFVNGVYDSWT
CEECCCCCCHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCC
DNMSMLRPLVESGQIQLGNHTWSHPDLTAMTKSEIATQLNRNDDFLKKNYGIAAQPYWRP
CCHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCC
PYAKHNATVDAVAVDLGYTVPTLWSGSLSDSTLITEDYIVKMADQYFTPQAIVIGHLNHL
CCCCCCCEEEEEEEECCCCCCCEECCCCCCCEEEHHHHHHHHHHHHCCCCEEEEECCCCC
PVTHVYPQLIDIIRSRHLRTVTLNDVFLTTS
CHHHHHHHHHHHHHHCCEEEEEECEEEEECC
>Mature Secondary Structure 
SALNRRSFLGALAVSTVTGLGAVRLVVGPQPRTFVQAPVVAELTPTPNAAGVLPPPPTS
CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCEEEEECCCCCCCCCCCCCCCC
ARIPLPGGGVLSKIPGRGDLLALTVDDGVNTEVVRSYVQFVKDTDIRLTFFVNGVYDSWT
CEECCCCCCHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCC
DNMSMLRPLVESGQIQLGNHTWSHPDLTAMTKSEIATQLNRNDDFLKKNYGIAAQPYWRP
CCHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCC
PYAKHNATVDAVAVDLGYTVPTLWSGSLSDSTLITEDYIVKMADQYFTPQAIVIGHLNHL
CCCCCCCEEEEEEEECCCCCCCEECCCCCCCEEEHHHHHHHHHHHHCCCCEEEEECCCCC
PVTHVYPQLIDIIRSRHLRTVTLNDVFLTTS
CHHHHHHHHHHHHHHCCEEEEEECEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8170399 [H]