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The map label for this gene is 220918435

Identifier: 220918435

GI number: 220918435

Start: 3717201

End: 3717686

Strand: Direct

Name: 220918435

Synonym: A2cp1_3339

Alternate gene names: NA

Gene position: 3717201-3717686 (Clockwise)

Preceding gene: 220918432

Following gene: 220918436

Centisome position: 73.91

GC content: 72.84

Gene sequence:

>486_bases
ATGGACGAGCAGGCGGCTGCCCGGCTCTACCGGACCTACGGGCCGGCCGTCTATCGCCGTTGCCTGCGGCTGCTGCGGGA
TCGCGAGCTGGCCCGCGACGCGACGCAGGACGTCTTCGTCCAGCTCCTGCGGCACTGGACCACGTCGACCGAGCCGGAGG
CGGTGCTGCACTGGATCTACCGGGTGGCCACCAACCACTGCCTCAACCTCCTGCGCAACGCGCGGCGTCACGGGGAGCGA
TCCCTGGAGCTCGCCCCGGCGCGCGCGGCGGCGGGGACGGCCGCCGAGCCGCAGCGCCTGGTCGCGCAGCGGGTACTGTC
GCGGTTCGACGAGGTGACGCAGGCGGTCGCGGTGGGGGTGTTCGTGGACGGGATGGAGCACGAGGAGCTGGCGCGTGCGC
TCGGGATCTCCCGGCGTACGGTGAGCCGTCGCCTCGACCGCTTCGTCGAGTCCGCGCGCGAGTATCTGGCCCGAGGTGAG
GGATGA

Upstream 100 bases:

>100_bases
CCCGGGGACACCTGCACCCCAGGTGCGCGCACCCCGTTGGGCTTGGCGCGCCGGGACCCACGCGCCCTGCCGCCGGTGTC
GTTAGGAACGTGCGGTGCCG

Downstream 100 bases:

>100_bases
CGGCCTGCCCGTCCGACCTGAGGCTGGAAGCCCTGCTGCTCGCGCCCGACGGCGCCGACGCGGCGCACGTGACCGCGTGC
CCGGCCTGCCAGGAGCGGCT

Product: ECF subfamily RNA polymerase sigma-24 subunit

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MDEQAAARLYRTYGPAVYRRCLRLLRDRELARDATQDVFVQLLRHWTTSTEPEAVLHWIYRVATNHCLNLLRNARRHGER
SLELAPARAAAGTAAEPQRLVAQRVLSRFDEVTQAVAVGVFVDGMEHEELARALGISRRTVSRRLDRFVESAREYLARGE
G

Sequences:

>Translated_161_residues
MDEQAAARLYRTYGPAVYRRCLRLLRDRELARDATQDVFVQLLRHWTTSTEPEAVLHWIYRVATNHCLNLLRNARRHGER
SLELAPARAAAGTAAEPQRLVAQRVLSRFDEVTQAVAVGVFVDGMEHEELARALGISRRTVSRRLDRFVESAREYLARGE
G
>Mature_161_residues
MDEQAAARLYRTYGPAVYRRCLRLLRDRELARDATQDVFVQLLRHWTTSTEPEAVLHWIYRVATNHCLNLLRNARRHGER
SLELAPARAAAGTAAEPQRLVAQRVLSRFDEVTQAVAVGVFVDGMEHEELARALGISRRTVSRRLDRFVESAREYLARGE
G

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18411; Mature: 18411

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEQAAARLYRTYGPAVYRRCLRLLRDRELARDATQDVFVQLLRHWTTSTEPEAVLHWIY
CCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RVATNHCLNLLRNARRHGERSLELAPARAAAGTAAEPQRLVAQRVLSRFDEVTQAVAVGV
HHHHHHHHHHHHHHHHHCCHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FVDGMEHEELARALGISRRTVSRRLDRFVESAREYLARGEG
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDEQAAARLYRTYGPAVYRRCLRLLRDRELARDATQDVFVQLLRHWTTSTEPEAVLHWIY
CCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RVATNHCLNLLRNARRHGERSLELAPARAAAGTAAEPQRLVAQRVLSRFDEVTQAVAVGV
HHHHHHHHHHHHHHHHHCCHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FVDGMEHEELARALGISRRTVSRRLDRFVESAREYLARGEG
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA