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The map label for this gene is rsmE [H]

Identifier: 220918289

GI number: 220918289

Start: 3535858

End: 3536601

Strand: Direct

Name: rsmE [H]

Synonym: A2cp1_3192

Alternate gene names: 220918289

Gene position: 3535858-3536601 (Clockwise)

Preceding gene: 220918288

Following gene: 220918291

Centisome position: 70.3

GC content: 77.28

Gene sequence:

>744_bases
GTGAACCTCCTGCTGCTCGAGCCCGGAGAGCTCTCCGCCGGCGGCACCGCCCGGCTGGCCGGTCGGCGCGCGCGGCACGT
GCTGGAGGTGCTGCGCGCCGGCGCCGGCGACCGGATCCAGGCCGGGGTGATCGGCGGACGCATGGGCGAGGCGGAGATCC
TCACCGCGACGCCGGACGAGGTGGTGATCGCGGCCTCGCCCGATCGGGAGCCGCCGCCGCCCTCGCCGGTGGCGCTCCTG
CTCGCCCTGCCCCGCCCGAAGATCCTGCGCAAGGTGCTGCAGGCCGCCGCCTCCATGGGGGTCAAGCGGCTGGTGCTCCT
CGGCAGCTACCGCGTGGAGAAGAGCTACTTCGCGTCGCCGCTGCTCGCGCCCGACGCGATCCGCGAGCAGCTGCTGCTCG
GCCTGGAGCAGGGGCGCGACACGATCCTGCCCGAGGTGGAGCTGCACCGGTTCTTCAAACCGTTCGTGGAGGACCTGCTC
GACGCGCGCTTCCCTGAGCGCGACCGGCTCCTCGCGCACCCGGCCGGCGCGGCGCCGCTGGAGGCGCTCGCGCCGGCCGG
CCCGCGGGCCGCGCTCGCGATCGGCCCGGAGGGCGGGTGGACGCCGTACGAGGCCGCGGCGCTGCGCGACCGCGGGTTCG
CCCCGTTCACGCTGGGTCCGCGGGTGCTGCGCGTCGACGCGGCGGTGCCGTACGCCGTCGGCCAGGCCGAGCTCTGGCTG
CGCGGCGCGGGCCGGCCGGCCTGA

Upstream 100 bases:

>100_bases
CCGCGCAGCAGGTGGGGCCCCGCGGAGCTCCGCTCCGCGGGGCGGGGCGCAGCCCCGTTCCGGTTGACAGGCGCGCAACG
CTCGGCCACCGTCCGCGCGC

Downstream 100 bases:

>100_bases
GCCGTGCCTGGCCAGTCGCGAGGGGCCGCAGCCCCGTAGGATCGCCCGGACGGTCGCGTCAGCCGCGACACGCACCGATC
GCGGCTCACGCACTGCCGTT

Product: 16S ribosomal RNA methyltransferase RsmE

Products: NA

Alternate protein names: 16S rRNA m3U1498 methyltransferase [H]

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MNLLLLEPGELSAGGTARLAGRRARHVLEVLRAGAGDRIQAGVIGGRMGEAEILTATPDEVVIAASPDREPPPPSPVALL
LALPRPKILRKVLQAAASMGVKRLVLLGSYRVEKSYFASPLLAPDAIREQLLLGLEQGRDTILPEVELHRFFKPFVEDLL
DARFPERDRLLAHPAGAAPLEALAPAGPRAALAIGPEGGWTPYEAAALRDRGFAPFTLGPRVLRVDAAVPYAVGQAELWL
RGAGRPA

Sequences:

>Translated_247_residues
MNLLLLEPGELSAGGTARLAGRRARHVLEVLRAGAGDRIQAGVIGGRMGEAEILTATPDEVVIAASPDREPPPPSPVALL
LALPRPKILRKVLQAAASMGVKRLVLLGSYRVEKSYFASPLLAPDAIREQLLLGLEQGRDTILPEVELHRFFKPFVEDLL
DARFPERDRLLAHPAGAAPLEALAPAGPRAALAIGPEGGWTPYEAAALRDRGFAPFTLGPRVLRVDAAVPYAVGQAELWL
RGAGRPA
>Mature_247_residues
MNLLLLEPGELSAGGTARLAGRRARHVLEVLRAGAGDRIQAGVIGGRMGEAEILTATPDEVVIAASPDREPPPPSPVALL
LALPRPKILRKVLQAAASMGVKRLVLLGSYRVEKSYFASPLLAPDAIREQLLLGLEQGRDTILPEVELHRFFKPFVEDLL
DARFPERDRLLAHPAGAAPLEALAPAGPRAALAIGPEGGWTPYEAAALRDRGFAPFTLGPRVLRVDAAVPYAVGQAELWL
RGAGRPA

Specific function: Specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [H]

COG id: COG1385

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase RsmE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006700 [H]

Pfam domain/function: PF04452 Methyltrans_RNA [H]

EC number: =2.1.1.193 [H]

Molecular weight: Translated: 26302; Mature: 26302

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLLLEPGELSAGGTARLAGRRARHVLEVLRAGAGDRIQAGVIGGRMGEAEILTATPDE
CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEECCCC
VVIAASPDREPPPPSPVALLLALPRPKILRKVLQAAASMGVKRLVLLGSYRVEKSYFASP
EEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCHHHHHHHHCHHHHHHHHCCC
LLAPDAIREQLLLGLEQGRDTILPEVELHRFFKPFVEDLLDARFPERDRLLAHPAGAAPL
CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCH
EALAPAGPRAALAIGPEGGWTPYEAAALRDRGFAPFTLGPRVLRVDAAVPYAVGQAELWL
HHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCEECCCEEEEECCCCCCCCCCCEEEE
RGAGRPA
ECCCCCC
>Mature Secondary Structure
MNLLLLEPGELSAGGTARLAGRRARHVLEVLRAGAGDRIQAGVIGGRMGEAEILTATPDE
CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEECCCC
VVIAASPDREPPPPSPVALLLALPRPKILRKVLQAAASMGVKRLVLLGSYRVEKSYFASP
EEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCHHHHHHHHCHHHHHHHHCCC
LLAPDAIREQLLLGLEQGRDTILPEVELHRFFKPFVEDLLDARFPERDRLLAHPAGAAPL
CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCH
EALAPAGPRAALAIGPEGGWTPYEAAALRDRGFAPFTLGPRVLRVDAAVPYAVGQAELWL
HHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCEECCCEEEEECCCCCCCCCCCEEEE
RGAGRPA
ECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]