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The map label for this gene is yxjL [H]

Identifier: 220918037

GI number: 220918037

Start: 3249551

End: 3250198

Strand: Reverse

Name: yxjL [H]

Synonym: A2cp1_2938

Alternate gene names: 220918037

Gene position: 3250198-3249551 (Counterclockwise)

Preceding gene: 220918039

Following gene: 220918036

Centisome position: 64.62

GC content: 71.91

Gene sequence:

>648_bases
ATGGCAATCCGGGCCATCGCGGTCGAGGACGACGAGGCGGTGTCGAAGCTCATCGCCCAGGTCTTGACCTCGCACGGATT
CGAGGTGTGCGGGACCGCGGCGACGGGCGAGGACGGCGTGGCCCTGGCCCGGCGCGAGCGGCCGGACGTCGCCCTGGTGG
ACCTCGGCCTGCCGAAGATGAGCGGCGAGGACGTCATCGCCACCATCCGGCAGGAGCTGCCCAAGACGGCGTGCATCGCG
CTCACCGCGGTGGACATCCCCGCGCGCGTGCTGAACGCGATGCGGGCCGGCGCGTCGGGCTACATCCTGAAGCCCTTCCA
CGCGGCGGATCTCACCAAGGCGGTGGAGGACGTGCTCTCCGGCGAGGCCGCGCCCATCAGCCCGCGCGCGGCGAAGGTCC
TGCTGCAGGAGTTCCGCGGCGATCCGCCGGACCAGCGCGCGAAGGACGGCCCGGCGCTCTCGAAGCGCGAGCTCGAGGTG
CTGCAGCTGCTGGTGCACGGCCACACCTACGCGGACGTGGCCACGGCCCTCGGCATCGCCGAGGGCACCGTCCAGACGTA
CGTGAAGCGCATCTACGAGAAGATGGACGTCTCGACGAAGGCCGAGGCCGCGCTGCTCGCGGTCGCGCGCGGGCTCGTGA
AGCCCTAG

Upstream 100 bases:

>100_bases
CGGCGGGGGGCGCGCATCCTTGACCCTCCCTGCCCCGGGCTGGTACGAATGGCTGCGATTTTACGGGGGTGCGTAGGTAC
TCCCCAGGGGGGCGCGCTTC

Downstream 100 bases:

>100_bases
GCGCCGGCGCCGCCTCGCGGGGTCGCGAGGGGCCGCCTCGAGGCCCGGGTCCCTCCCGGGGTCGAGGAGGCTTACATCCC
TGGGAAGTCCGGCGCGCGCG

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MAIRAIAVEDDEAVSKLIAQVLTSHGFEVCGTAATGEDGVALARRERPDVALVDLGLPKMSGEDVIATIRQELPKTACIA
LTAVDIPARVLNAMRAGASGYILKPFHAADLTKAVEDVLSGEAAPISPRAAKVLLQEFRGDPPDQRAKDGPALSKRELEV
LQLLVHGHTYADVATALGIAEGTVQTYVKRIYEKMDVSTKAEAALLAVARGLVKP

Sequences:

>Translated_215_residues
MAIRAIAVEDDEAVSKLIAQVLTSHGFEVCGTAATGEDGVALARRERPDVALVDLGLPKMSGEDVIATIRQELPKTACIA
LTAVDIPARVLNAMRAGASGYILKPFHAADLTKAVEDVLSGEAAPISPRAAKVLLQEFRGDPPDQRAKDGPALSKRELEV
LQLLVHGHTYADVATALGIAEGTVQTYVKRIYEKMDVSTKAEAALLAVARGLVKP
>Mature_214_residues
AIRAIAVEDDEAVSKLIAQVLTSHGFEVCGTAATGEDGVALARRERPDVALVDLGLPKMSGEDVIATIRQELPKTACIAL
TAVDIPARVLNAMRAGASGYILKPFHAADLTKAVEDVLSGEAAPISPRAAKVLLQEFRGDPPDQRAKDGPALSKRELEVL
QLLVHGHTYADVATALGIAEGTVQTYVKRIYEKMDVSTKAEAALLAVARGLVKP

Specific function: Probable member of the two-component regulatory system yxjM/yxjL [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788222, Length=216, Percent_Identity=28.2407407407407, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1788521, Length=184, Percent_Identity=31.5217391304348, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788712, Length=199, Percent_Identity=25.1256281407035, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787473, Length=177, Percent_Identity=31.0734463276836, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1790102, Length=156, Percent_Identity=32.0512820512821, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22713; Mature: 22582

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIRAIAVEDDEAVSKLIAQVLTSHGFEVCGTAATGEDGVALARRERPDVALVDLGLPKM
CCEEEEEECCHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHCCCCCEEEEECCCCCC
SGEDVIATIRQELPKTACIALTAVDIPARVLNAMRAGASGYILKPFHAADLTKAVEDVLS
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHC
GEAAPISPRAAKVLLQEFRGDPPDQRAKDGPALSKRELEVLQLLVHGHTYADVATALGIA
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
EGTVQTYVKRIYEKMDVSTKAEAALLAVARGLVKP
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AIRAIAVEDDEAVSKLIAQVLTSHGFEVCGTAATGEDGVALARRERPDVALVDLGLPKM
CEEEEEECCHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHCCCCCEEEEECCCCCC
SGEDVIATIRQELPKTACIALTAVDIPARVLNAMRAGASGYILKPFHAADLTKAVEDVLS
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHC
GEAAPISPRAAKVLLQEFRGDPPDQRAKDGPALSKRELEVLQLLVHGHTYADVATALGIA
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
EGTVQTYVKRIYEKMDVSTKAEAALLAVARGLVKP
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8978088; 8969509; 9384377 [H]