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The map label for this gene is atpD

Identifier: 220917860

GI number: 220917860

Start: 3046532

End: 3047161

Strand: Reverse

Name: atpD

Synonym: A2cp1_2761

Alternate gene names: 220917860

Gene position: 3047161-3046532 (Counterclockwise)

Preceding gene: 220917861

Following gene: 220917858

Centisome position: 60.59

GC content: 77.94

Gene sequence:

>630_bases
ATGAGCCGCGCCGCCACCACGCGGATGGGGCTGCTCGAGGTCCGTGCCCGCCGCGCCGTGGCCGGCAAGGGGGCGCGGCT
CCTGCGCGCCAAGCGCGAGGTGCTGGCGAGCGAGCTGTGGAAGCTGGTGCACGACGTGCTGGAGGGGCGCGCCCGGCTGG
ACGAGGCGCTGCACCGCGCGGTGAAGGCGCTCGAGCTGGCGAAGGCGCTGGAGGGCGAGGAGCGGCTCGCGTCGCTGGCG
CTGCCGGCGGCCCGCGCCGTCCCGCTCGCCGTGACGGTGCGGCGCGTGTGGGGCGTGCCGACTCCGTCGGTGGCGGCGCC
GCCGCTGGTGCGCGCGGCCGATCAGCGGGGCAGCTCGCCGGTGAGCTGGGGGCCGTCCGGCGCGGACGCCGCGCGCCACC
ACGAGGAGTCGCTGGAGGTGCTGCTGACCATCGCCTCCAAGGAGCTGCACCTCGCCCGGCTCGGCGAGGAGATCCGGGAG
ACCTCGCGGCGCATCAACGCGCTCGAGCAGCTCGTCCTGCCCGCGCTCCGGTCCGAGGCCTCGCGCATCGCCGCGGCGCT
GGACGAACGCGACCGCGAGGACGCGGTGCGGCTGCGCCGCTTCCGCGCCCGCCACCCACGCCCGGCCTGA

Upstream 100 bases:

>100_bases
TCCCGCCCGCGGCGCTCACCCGCATCCCGGAGCGGCTGCTGCGCGCCCGTTCGGCCCGACCCGCGGCCGGGGCGGCGGCG
GTGTCCGGCGGAGCCGTCGC

Downstream 100 bases:

>100_bases
ACGGCTGCGCCGGCGCTCTCAGCTCGGCCGTCGCCACAGCGGCAGCAGCTCGGGCGGGAGCAGCCGCCCCACCTCCTCGG
CCTGCTCCTCCGGGAGCTGC

Product: V-type ATPase, D subunit

Products: NA

Alternate protein names: V-ATPase subunit D

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MSRAATTRMGLLEVRARRAVAGKGARLLRAKREVLASELWKLVHDVLEGRARLDEALHRAVKALELAKALEGEERLASLA
LPAARAVPLAVTVRRVWGVPTPSVAAPPLVRAADQRGSSPVSWGPSGADAARHHEESLEVLLTIASKELHLARLGEEIRE
TSRRINALEQLVLPALRSEASRIAAALDERDREDAVRLRRFRARHPRPA

Sequences:

>Translated_209_residues
MSRAATTRMGLLEVRARRAVAGKGARLLRAKREVLASELWKLVHDVLEGRARLDEALHRAVKALELAKALEGEERLASLA
LPAARAVPLAVTVRRVWGVPTPSVAAPPLVRAADQRGSSPVSWGPSGADAARHHEESLEVLLTIASKELHLARLGEEIRE
TSRRINALEQLVLPALRSEASRIAAALDERDREDAVRLRRFRARHPRPA
>Mature_208_residues
SRAATTRMGLLEVRARRAVAGKGARLLRAKREVLASELWKLVHDVLEGRARLDEALHRAVKALELAKALEGEERLASLAL
PAARAVPLAVTVRRVWGVPTPSVAAPPLVRAADQRGSSPVSWGPSGADAARHHEESLEVLLTIASKELHLARLGEEIRET
SRRINALEQLVLPALRSEASRIAAALDERDREDAVRLRRFRARHPRPA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane

COG id: COG1394

COG function: function code C; Archaeal/vacuolar-type H+-ATPase subunit D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the V-ATPase D subunit family

Homologues:

Organism=Caenorhabditis elegans, GI17553636, Length=207, Percent_Identity=24.6376811594203, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): VATD_ANAD2 (B8JE33)

Other databases:

- EMBL:   CP001359
- RefSeq:   YP_002493164.1
- GeneID:   7298829
- GenomeReviews:   CP001359_GR
- KEGG:   acp:A2cp1_2761
- HOGENOM:   HBG732046
- ProtClustDB:   CLSK945516
- HAMAP:   MF_00271
- InterPro:   IPR002699
- PANTHER:   PTHR11671
- TIGRFAMs:   TIGR00309

Pfam domain/function: PF01813 ATP-synt_D

EC number: NA

Molecular weight: Translated: 22946; Mature: 22815

Theoretical pI: Translated: 11.73; Mature: 11.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRAATTRMGLLEVRARRAVAGKGARLLRAKREVLASELWKLVHDVLEGRARLDEALHRA
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKALELAKALEGEERLASLALPAARAVPLAVTVRRVWGVPTPSVAAPPLVRAADQRGSSP
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCC
VSWGPSGADAARHHEESLEVLLTIASKELHLARLGEEIRETSRRINALEQLVLPALRSEA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRIAAALDERDREDAVRLRRFRARHPRPA
HHHHHHHHHCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SRAATTRMGLLEVRARRAVAGKGARLLRAKREVLASELWKLVHDVLEGRARLDEALHRA
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKALELAKALEGEERLASLALPAARAVPLAVTVRRVWGVPTPSVAAPPLVRAADQRGSSP
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCC
VSWGPSGADAARHHEESLEVLLTIASKELHLARLGEEIRETSRRINALEQLVLPALRSEA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRIAAALDERDREDAVRLRRFRARHPRPA
HHHHHHHHHCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA