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The map label for this gene is hybB [C]

Identifier: 220917061

GI number: 220917061

Start: 2211415

End: 2212626

Strand: Direct

Name: hybB [C]

Synonym: A2cp1_1957

Alternate gene names: 220917061

Gene position: 2211415-2212626 (Clockwise)

Preceding gene: 220917060

Following gene: 220917062

Centisome position: 43.97

GC content: 65.84

Gene sequence:

>1212_bases
ATGGCTAACGCCACCGCGGTCGCCCAGCACTCGTTCGTCCGCGAGAAGATCCTGCTCGGGATGAGCTTGAAGGAGTACCT
CCGCGCCCAGCTCACGCCGACGAACGCCGTCGCGACGTTCATCCTCATCATCGGCGTGCCGCTGCTCGTCTACCGCTTCG
CGGCGGGCCTGGGCGCCACCACGAACCTGTCGCAGTCGGCGCCGTGGGGCCTCTGGATCGGCTTCGACATGATGACCGGC
ATCGTGCTCGCCGCCGGCGGGTTCACCATCGGCTCGGCGGTGCAGCTGTTCGGGCTGAAGGACTACCACGGCATCGAGCG
GCCCGCGATCCTCACCGCCTTCCTCGGCTACGTGATGGCGGTCATCGGCCTGCTCGCCGACCTGGGCCGCCCCTGGAACA
TCATCATGGCGCTCTTCAACTTCGGGACCGCCTCGGTGCTGTTCGAGGTCGCGTGGTGCGTCATGTGCTACACGACCGTC
CTGCTGCTCGAGTTCACCGTGCCGATGTTCGAGTGGCTCGGCTGGAAGCGCATCCACTCGGTGATGAAGAAGACGCTCAT
CGCCCTCACGGTGCTCTCGGTCATCTTCTCGACCATGCACCAGTCGGCGCTCGGCTCGCTCTTCCTGCTCGCGCCGACCA
AGCTCCACCCGCTCTGGTACACGCCCTACATCTTCGTGTTCTTCTTCGTCAGCGCGATCATCGCCGGCCTCAACATGGTG
ATCTTCGAGAGCGCGCTCTCGCACCGGATCTTCCAGACCCGGGCCGACCACCACGTCGACGTCGACAAGCTGACCATCGG
CCTCGGGAAGGCGGCGGCGGTGGTGATGTTCGCCTACTTCTTCCTGAAGCTGCAGAGCGTGGTGGACGGGCACAGCTGGG
GCTACCTGGCCACCGGCTACGGCGCCTGGTGGCTGGTCGAGGTCGTCGGCTTCGTGCTGCTGCCTTCGCTGGTGTTCGCC
TACGGCGCGCGCAACCGCAAGGTGAAGCTCATCCGGGCGGCCTCGGTGATCGGCGTCCTCGGGGTGGTGCTGAACCGCCT
GAACATCTCGGTCATCGCGTTCAACTGGAACCGGGTCGACCGGTACGTGCCGAGCTGGATGGAGATCTGGGTGTCCATCA
CCCTCGTCACCATCGGCGTGCTGGCGTACCGCTGGATCGTCAACCGCATGCCCATCCTGCGTGGGGACCCGGCGTTCCCC
GCTGAGCACTGA

Upstream 100 bases:

>100_bases
CTCTGGCCGCCGCTGCTGATGGGCATCTACGCGTTCTCCAACCGGCGCGAGGAGATCAAGAACGCCGAGTCGGAGCCGTC
GAACGGGAAGGAGGAGCACC

Downstream 100 bases:

>100_bases
AAGGAGGAAGCCATGGCCTACGACCTGCTCTCCGTGTATCCGGCCAAGCTCCTCGAGTACGGACTCGGGATCGCCTACCT
GCTGATGTTCATCCCGTTCT

Product: polysulfide reductase NrfD

Products: NA

Alternate protein names: HMC operon ORF 3 [H]

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MANATAVAQHSFVREKILLGMSLKEYLRAQLTPTNAVATFILIIGVPLLVYRFAAGLGATTNLSQSAPWGLWIGFDMMTG
IVLAAGGFTIGSAVQLFGLKDYHGIERPAILTAFLGYVMAVIGLLADLGRPWNIIMALFNFGTASVLFEVAWCVMCYTTV
LLLEFTVPMFEWLGWKRIHSVMKKTLIALTVLSVIFSTMHQSALGSLFLLAPTKLHPLWYTPYIFVFFFVSAIIAGLNMV
IFESALSHRIFQTRADHHVDVDKLTIGLGKAAAVVMFAYFFLKLQSVVDGHSWGYLATGYGAWWLVEVVGFVLLPSLVFA
YGARNRKVKLIRAASVIGVLGVVLNRLNISVIAFNWNRVDRYVPSWMEIWVSITLVTIGVLAYRWIVNRMPILRGDPAFP
AEH

Sequences:

>Translated_403_residues
MANATAVAQHSFVREKILLGMSLKEYLRAQLTPTNAVATFILIIGVPLLVYRFAAGLGATTNLSQSAPWGLWIGFDMMTG
IVLAAGGFTIGSAVQLFGLKDYHGIERPAILTAFLGYVMAVIGLLADLGRPWNIIMALFNFGTASVLFEVAWCVMCYTTV
LLLEFTVPMFEWLGWKRIHSVMKKTLIALTVLSVIFSTMHQSALGSLFLLAPTKLHPLWYTPYIFVFFFVSAIIAGLNMV
IFESALSHRIFQTRADHHVDVDKLTIGLGKAAAVVMFAYFFLKLQSVVDGHSWGYLATGYGAWWLVEVVGFVLLPSLVFA
YGARNRKVKLIRAASVIGVLGVVLNRLNISVIAFNWNRVDRYVPSWMEIWVSITLVTIGVLAYRWIVNRMPILRGDPAFP
AEH
>Mature_402_residues
ANATAVAQHSFVREKILLGMSLKEYLRAQLTPTNAVATFILIIGVPLLVYRFAAGLGATTNLSQSAPWGLWIGFDMMTGI
VLAAGGFTIGSAVQLFGLKDYHGIERPAILTAFLGYVMAVIGLLADLGRPWNIIMALFNFGTASVLFEVAWCVMCYTTVL
LLEFTVPMFEWLGWKRIHSVMKKTLIALTVLSVIFSTMHQSALGSLFLLAPTKLHPLWYTPYIFVFFFVSAIIAGLNMVI
FESALSHRIFQTRADHHVDVDKLTIGLGKAAAVVMFAYFFLKLQSVVDGHSWGYLATGYGAWWLVEVVGFVLLPSLVFAY
GARNRKVKLIRAASVIGVLGVVLNRLNISVIAFNWNRVDRYVPSWMEIWVSITLVTIGVLAYRWIVNRMPILRGDPAFPA
EH

Specific function: HMWC (high-molecular-weight cytochrome c), ORF2, ORF3, ORF4, ORF5 and ORF6 in the HMC operon form a transmembrane protein complex that allows electron flow from the periplasmic hydrogenase to the cytoplasmic enzymes that catalyze reduction of sulfates [H]

COG id: COG5557

COG function: function code C; Polysulphide reductase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nrfD family [H]

Homologues:

Organism=Escherichia coli, GI2367183, Length=358, Percent_Identity=31.5642458100559, Blast_Score=171, Evalue=6e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005614 [H]

Pfam domain/function: PF03916 NrfD [H]

EC number: NA

Molecular weight: Translated: 44731; Mature: 44600

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ANATAVAQHSFVREKILLGMSLKEYLRAQLTPTNAVATFILIIGVPLLVYRFAAGLGAT
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
TNLSQSAPWGLWIGFDMMTGIVLAAGGFTIGSAVQLFGLKDYHGIERPAILTAFLGYVMA
CCCCCCCCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHH
VIGLLADLGRPWNIIMALFNFGTASVLFEVAWCVMCYTTVLLLEFTVPMFEWLGWKRIHS
HHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
VMKKTLIALTVLSVIFSTMHQSALGSLFLLAPTKLHPLWYTPYIFVFFFVSAIIAGLNMV
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
IFESALSHRIFQTRADHHVDVDKLTIGLGKAAAVVMFAYFFLKLQSVVDGHSWGYLATGY
HHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCC
GAWWLVEVVGFVLLPSLVFAYGARNRKVKLIRAASVIGVLGVVLNRLNISVIAFNWNRVD
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHCCEEEEEEECHHHH
RYVPSWMEIWVSITLVTIGVLAYRWIVNRMPILRGDPAFPAEH
HHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8335628 [H]