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The map label for this gene is ycdC [C]

Identifier: 220915279

GI number: 220915279

Start: 176858

End: 177481

Strand: Reverse

Name: ycdC [C]

Synonym: A2cp1_0158

Alternate gene names: 220915279

Gene position: 177481-176858 (Counterclockwise)

Preceding gene: 220915283

Following gene: 220915278

Centisome position: 3.53

GC content: 74.36

Gene sequence:

>624_bases
ATGGACGGATCGGTGGCTACCCGCCGTATCGGTCCTCCGCGGGCCGGGATCGCGGAGCGGATCTGGGACGCGGCCAGGGC
CGAGTTCTCGAAGCGGGGGTACCACGGTGCCCGCGTGCAGGGGATCGCACGCGGTGCGTCCTGCAACGTGGCGCTCATCT
ATCGCCACTGGGCCTCCAAGCGGGCCCTCTACCTCGACATCCTGCGGGCGGTGTGGCTCTCGGCGGCGAACGAGCTGTCG
CGCTTCGTCGAGAACGGCTCGGGCGGTCCGGAGGCGGTCATCGCCGCCTACCTCGACGCCATGATGCACGACGCGATGGG
CGCGCAGATCCTGGTGCGCGAGTACCTGGACGGCGCCCCCTACCTGTCCCAGCTCACCACCGCCGAGCCGGCGCTGCTCG
ACCCGCTCCGGCGGGCGGCGGCGGTGATCGCGGAGGGCACCGACGGCGGCGTCGATCCGGTGCTCGCCGTCGTGACCGTG
GGCGGCCTCGCCGCGCTGGTGGCGTCCTCGCGGGAGGCGATGCTGCCGATGGTCGGCCAGCAGCTCGCGCCCGAGGCCTG
GCGCGCGCACGTGCTGCACGTGCTCGCGAACGGGCTCGCCCCGCGCGCCGGCCCGCGCGGCTGA

Upstream 100 bases:

>100_bases
CGGATCCATCGCCCTGTACATAGGACAACCCCCTGCCGTGCCCAACGGGGACGCCGCGCCACTTGATCCTGATCAAGTGG
CCCGGTAAGTAGCGGCTTGC

Downstream 100 bases:

>100_bases
GCGCCCGCCGCCCGTCTGCGCGCCCGGCCCGCCGTCCCGGCGGGGGCACGCGAGCCTTTCCGGCGCGCCGGGGCGGGCGT
AGGCTCGCGCACCATGAAGA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MDGSVATRRIGPPRAGIAERIWDAARAEFSKRGYHGARVQGIARGASCNVALIYRHWASKRALYLDILRAVWLSAANELS
RFVENGSGGPEAVIAAYLDAMMHDAMGAQILVREYLDGAPYLSQLTTAEPALLDPLRRAAAVIAEGTDGGVDPVLAVVTV
GGLAALVASSREAMLPMVGQQLAPEAWRAHVLHVLANGLAPRAGPRG

Sequences:

>Translated_207_residues
MDGSVATRRIGPPRAGIAERIWDAARAEFSKRGYHGARVQGIARGASCNVALIYRHWASKRALYLDILRAVWLSAANELS
RFVENGSGGPEAVIAAYLDAMMHDAMGAQILVREYLDGAPYLSQLTTAEPALLDPLRRAAAVIAEGTDGGVDPVLAVVTV
GGLAALVASSREAMLPMVGQQLAPEAWRAHVLHVLANGLAPRAGPRG
>Mature_207_residues
MDGSVATRRIGPPRAGIAERIWDAARAEFSKRGYHGARVQGIARGASCNVALIYRHWASKRALYLDILRAVWLSAANELS
RFVENGSGGPEAVIAAYLDAMMHDAMGAQILVREYLDGAPYLSQLTTAEPALLDPLRRAAAVIAEGTDGGVDPVLAVVTV
GGLAALVASSREAMLPMVGQQLAPEAWRAHVLHVLANGLAPRAGPRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21868; Mature: 21868

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGSVATRRIGPPRAGIAERIWDAARAEFSKRGYHGARVQGIARGASCNVALIYRHWASK
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEEEHHHHCC
RALYLDILRAVWLSAANELSRFVENGSGGPEAVIAAYLDAMMHDAMGAQILVREYLDGAP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
YLSQLTTAEPALLDPLRRAAAVIAEGTDGGVDPVLAVVTVGGLAALVASSREAMLPMVGQ
HHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
QLAPEAWRAHVLHVLANGLAPRAGPRG
HHCHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MDGSVATRRIGPPRAGIAERIWDAARAEFSKRGYHGARVQGIARGASCNVALIYRHWASK
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEEEHHHHCC
RALYLDILRAVWLSAANELSRFVENGSGGPEAVIAAYLDAMMHDAMGAQILVREYLDGAP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
YLSQLTTAEPALLDPLRRAAAVIAEGTDGGVDPVLAVVTVGGLAALVASSREAMLPMVGQ
HHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
QLAPEAWRAHVLHVLANGLAPRAGPRG
HHCHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA