Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
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Accession | NC_011883 |
Length | 2,873,437 |
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The map label for this gene is purH [H]
Identifier: 220905525
GI number: 220905525
Start: 2724566
End: 2725843
Strand: Reverse
Name: purH [H]
Synonym: Ddes_2264
Alternate gene names: 220905525
Gene position: 2725843-2724566 (Counterclockwise)
Preceding gene: 220905530
Following gene: 220905524
Centisome position: 94.86
GC content: 60.02
Gene sequence:
>1278_bases ATGTCGGATCTCAAGGCCATGTACAGCACTGTCCGCAAGGACGCTTTTCCCGAAACCATGACCATCATTCTTGGCGATGA AAAACTCGTGTTCCAGAAGCGTGTCTGGACGCTGGACGGCGAGGAAAAGGGCCTGCGCTATGGGGAAAACCCCGATCAGC CCGCAGCCCTGTACGCCCTGAAAGAGGGTTCCATCACTTGCGGCGGCCTCCAGTGGCGGGGTCCGGGGCACGGCATTGTT TCTGCCCTGACCGAAGAGCAGATGATCCAGGCGGGCAAGCACCCCGGCAAGACCAACCTGACGGACGTGGACAACGGGGC CAATATTCTTCAGTACCTCGCAGACCGCCCGGCGGCAGTCATTCTGAAGCACAATAATCCCTGCGGCGCGGCCTGGAGCA GGGACGGCGTGGCCACCGCCCTCGAAAAAGCCTTCTGGTGCGACCGTATCGCGGCTTTTGGCGGCGCGGTGGTCGTCAAC CGTTCCTTCACCCGTGAGGCCGCCGAAATGGTAGCCGCCAACTATTTTGAAGTGGTAGCTGCTCCGGCTTTTGAAGAAGG CGCGGTGGAGATTCTTAAAAGCCGAAAAAACCTGCGCATTATGGAACTGCCCGGCCTGGGCCGGCTTGAGGAACTGACCT CGTCGGCGTTTCTCGACATAAAGAGCCTGTCCGACGGCGGTATTGTAGTGCAGAAGTCTTTTGTAAACCGTGTTCTTTCC GGCGACGATTTTTTGCCCGCCACCGCCACCACAAGGGACGGCCTTTCTGTGGCGGCACGTGCGCCAAGCCCGGCTGAGCT GGATGACCTGCGCTTTGCCTGGGCCGTGGAGGCCGGTGTCACCTCCAACTCTGTCATTTTTGTGCGTGACGGGGCCACCG TGGCTATCGGCACGGGTGAACAGGATCGCGTGGGCTGTGTAGAGCTTGCCATACACAAGGCGCACACCAAGTATGCGGAT ACACTTGCCTTCCGTGAACTGGGCCTGACTCTTTACGAGCTGAAGCTCAAAGCCGCCGAAGACAGCACCCTGGCGGAAAA GCTGGCCGACATCGAGCGGCGCACAGAGGAAACCCACGGCGGCCTTGCCGGCACGGCCCTGGTGTCCGATGGTTTTTTCC CCTTTCGCGACGGCGTGGATGTAGCCATTGCCCAGGGCGTTACGGCCATAGCCCAGCCAGGCGGATCCATGCGTGACGCC GAAGTCATCATGGCCTGCAATGAGGCTGCTCCGCAGGTAGCCATGGTTTTTACGGGGCAGCGTTCTTTCAAGCATTAA
Upstream 100 bases:
>100_bases GCCGCGCCGCGCCGCATGGGCTGCGGATTTGGACTGGTGGGGCGGCTTCTTCTGTGCTATGCAAAACCCTTACCTGACCG GCGAACATCTGGAGGCAAGC
Downstream 100 bases:
>100_bases GCCCGGTGGCATCGGGCCGGATCGCGCCAAGGCGCGGTCCGGCCCTGCCGCCTGTATTTTCCCGGTCTGCCCCGGCCCGT GCGGCAGACTGGTCATGCCC
Product: phosphoribosylaminoimidazolecarboxamide formyltransferase
Products: NA
Alternate protein names: Phosphoribosylaminoimidazolecarboxamide formyltransferase; AICAR transformylase; IMP cyclohydrolase; ATIC; IMP synthase; Inosinicase [H]
Number of amino acids: Translated: 425; Mature: 424
Protein sequence:
>425_residues MSDLKAMYSTVRKDAFPETMTIILGDEKLVFQKRVWTLDGEEKGLRYGENPDQPAALYALKEGSITCGGLQWRGPGHGIV SALTEEQMIQAGKHPGKTNLTDVDNGANILQYLADRPAAVILKHNNPCGAAWSRDGVATALEKAFWCDRIAAFGGAVVVN RSFTREAAEMVAANYFEVVAAPAFEEGAVEILKSRKNLRIMELPGLGRLEELTSSAFLDIKSLSDGGIVVQKSFVNRVLS GDDFLPATATTRDGLSVAARAPSPAELDDLRFAWAVEAGVTSNSVIFVRDGATVAIGTGEQDRVGCVELAIHKAHTKYAD TLAFRELGLTLYELKLKAAEDSTLAEKLADIERRTEETHGGLAGTALVSDGFFPFRDGVDVAIAQGVTAIAQPGGSMRDA EVIMACNEAAPQVAMVFTGQRSFKH
Sequences:
>Translated_425_residues MSDLKAMYSTVRKDAFPETMTIILGDEKLVFQKRVWTLDGEEKGLRYGENPDQPAALYALKEGSITCGGLQWRGPGHGIV SALTEEQMIQAGKHPGKTNLTDVDNGANILQYLADRPAAVILKHNNPCGAAWSRDGVATALEKAFWCDRIAAFGGAVVVN RSFTREAAEMVAANYFEVVAAPAFEEGAVEILKSRKNLRIMELPGLGRLEELTSSAFLDIKSLSDGGIVVQKSFVNRVLS GDDFLPATATTRDGLSVAARAPSPAELDDLRFAWAVEAGVTSNSVIFVRDGATVAIGTGEQDRVGCVELAIHKAHTKYAD TLAFRELGLTLYELKLKAAEDSTLAEKLADIERRTEETHGGLAGTALVSDGFFPFRDGVDVAIAQGVTAIAQPGGSMRDA EVIMACNEAAPQVAMVFTGQRSFKH >Mature_424_residues SDLKAMYSTVRKDAFPETMTIILGDEKLVFQKRVWTLDGEEKGLRYGENPDQPAALYALKEGSITCGGLQWRGPGHGIVS ALTEEQMIQAGKHPGKTNLTDVDNGANILQYLADRPAAVILKHNNPCGAAWSRDGVATALEKAFWCDRIAAFGGAVVVNR SFTREAAEMVAANYFEVVAAPAFEEGAVEILKSRKNLRIMELPGLGRLEELTSSAFLDIKSLSDGGIVVQKSFVNRVLSG DDFLPATATTRDGLSVAARAPSPAELDDLRFAWAVEAGVTSNSVIFVRDGATVAIGTGEQDRVGCVELAIHKAHTKYADT LAFRELGLTLYELKLKAAEDSTLAEKLADIERRTEETHGGLAGTALVSDGFFPFRDGVDVAIAQGVTAIAQPGGSMRDAE VIMACNEAAPQVAMVFTGQRSFKH
Specific function: De novo purine biosynthesis; ninth step. De novo purine biosynthesis; tenth step. [C]
COG id: COG0138
COG function: function code F; AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the purH family [H]
Homologues:
Organism=Homo sapiens, GI20127454, Length=437, Percent_Identity=27.9176201372998, Blast_Score=105, Evalue=1e-22, Organism=Escherichia coli, GI1790439, Length=385, Percent_Identity=31.6883116883117, Blast_Score=158, Evalue=6e-40, Organism=Caenorhabditis elegans, GI71985564, Length=458, Percent_Identity=25.1091703056769, Blast_Score=95, Evalue=6e-20, Organism=Drosophila melanogaster, GI24649832, Length=433, Percent_Identity=26.7898383371824, Blast_Score=110, Evalue=1e-24,
Paralogues:
None
Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 640 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002695 - InterPro: IPR013982 - InterPro: IPR016193 - InterPro: IPR011607 [H]
Pfam domain/function: PF01808 AICARFT_IMPCHas; PF02142 MGS [H]
EC number: =2.1.2.3; =3.5.4.10 [H]
Molecular weight: Translated: 45594; Mature: 45463
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDLKAMYSTVRKDAFPETMTIILGDEKLVFQKRVWTLDGEEKGLRYGENPDQPAALYAL CCHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEE KEGSITCGGLQWRGPGHGIVSALTEEQMIQAGKHPGKTNLTDVDNGANILQYLADRPAAV ECCCEEECCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCEEE ILKHNNPCGAAWSRDGVATALEKAFWCDRIAAFGGAVVVNRSFTREAAEMVAANYFEVVA EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHC APAFEEGAVEILKSRKNLRIMELPGLGRLEELTSSAFLDIKSLSDGGIVVQKSFVNRVLS CCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHEEEEEECCCCCEEEEHHHHHHHHC GDDFLPATATTRDGLSVAARAPSPAELDDLRFAWAVEAGVTSNSVIFVRDGATVAIGTGE CCCCCCCCCCCCCCCEEEECCCCCCCHHHCEEEEEEECCCCCCCEEEEECCCEEEEECCC QDRVGCVELAIHKAHTKYADTLAFRELGLTLYELKLKAAEDSTLAEKLADIERRTEETHG CCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCC GLAGTALVSDGFFPFRDGVDVAIAQGVTAIAQPGGSMRDAEVIMACNEAAPQVAMVFTGQ CEEEEHHHCCCCCCCCCCCCCHHHCCCHHHHCCCCCCCCCEEEEEECCCCCEEEEEEECC RSFKH CCCCC >Mature Secondary Structure SDLKAMYSTVRKDAFPETMTIILGDEKLVFQKRVWTLDGEEKGLRYGENPDQPAALYAL CHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEE KEGSITCGGLQWRGPGHGIVSALTEEQMIQAGKHPGKTNLTDVDNGANILQYLADRPAAV ECCCEEECCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCEEE ILKHNNPCGAAWSRDGVATALEKAFWCDRIAAFGGAVVVNRSFTREAAEMVAANYFEVVA EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHC APAFEEGAVEILKSRKNLRIMELPGLGRLEELTSSAFLDIKSLSDGGIVVQKSFVNRVLS CCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHEEEEEECCCCCEEEEHHHHHHHHC GDDFLPATATTRDGLSVAARAPSPAELDDLRFAWAVEAGVTSNSVIFVRDGATVAIGTGE CCCCCCCCCCCCCCCEEEECCCCCCCHHHCEEEEEEECCCCCCCEEEEECCCEEEEECCC QDRVGCVELAIHKAHTKYADTLAFRELGLTLYELKLKAAEDSTLAEKLADIERRTEETHG CCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCC GLAGTALVSDGFFPFRDGVDVAIAQGVTAIAQPGGSMRDAEVIMACNEAAPQVAMVFTGQ CEEEEHHHCCCCCCCCCCCCCHHHCCCHHHHCCCCCCCCCEEEEEECCCCCEEEEEEECC RSFKH CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA