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The map label for this gene is secF [H]

Identifier: 220905190

GI number: 220905190

Start: 2321186

End: 2322289

Strand: Reverse

Name: secF [H]

Synonym: Ddes_1928

Alternate gene names: 220905190

Gene position: 2322289-2321186 (Counterclockwise)

Preceding gene: 220905191

Following gene: 220905182

Centisome position: 80.82

GC content: 56.88

Gene sequence:

>1104_bases
ATGAGTTTTACCTTTGTCAAGCACGACACCAATATCGATTTCATTGGCAAGCGCTACTGGGTGTACGGCATTTCCGTAGC
CCTTATTCTTATAGGCATAGCTTCGGCCATCTGGGGCAATGGCCTCAAGATGGGCATCGACTTTGCGGGCGGTGTTATCG
TCCAGGTACAGTTTCAGGAGCCCGTCGCCGACGAAGCCCTGAAAAAGAGTCTGGATATTCCGGCGCTGCCCGGCATCAGC
ACCCAGCGCTTCGGTGAGGGCGGGCGGGATTACCTGCTGCGCTTCAGCAGTGCGGAAAACGCCGATGCAACGCAGTTACG
CACCTCGGTTGTGGACGCGCTGGCGGCGACCTTTCCCGGCAATGCCGCCGAAATTGTGCGCCTTGAAATTGTCGGCCCCA
AGGTGGGCGCAGACCTGACAAACAAGGCCCTGAGCGCTCTTTATTACGCCATTCTGCTCATTGCGGTCTATATTTCCGGC
CGCTTCGAGCAGCGTTGGATGGCAGGCGTGATCATGGCCGGAGCCTTGTGGGGCGGCATCTATCTGGCGGGGCTTACCGG
ACTCAGCATGGGGTGGCTTGTGATGCTGGCCCTGAGCATAACCGTGCTTGTCTGCTTTGTGTTGCGGCTGAACTTTGCCC
TGGGGGCAGTGGTGGGGCTGATACATGACGTGGCCATCACCGTAGGACTACTGTCTTTGCTGGATGTGGAAATTGACCTT
AACGTCATGGCGGCCCTGATGACCCTGGTGGGCTTTTCGCTCAACGACACCATCATCATCTACGACCGCCTGCGTGAAAA
CCTGCGCGCCACGCCAGAACTGGACATGGCCCATCTTATCAACAAGAGTGTCAACCAGACGCTTTCACGTACCATCCTGA
CCAGTGGCACGACCTTCCTGTCTACCCTTGCGCTTTACCTGCTTGGTGGTGGCGTCATTCATGACTTTGCGCTGACCATG
CTCATTGGTGTGGTGGTGGGCACGGCTTCGTCCATTTACGTGTCTTCCGCCATGTTGCTGGCCCTGGGCGATACGGATTT
TTACGTAAGCCTGGTGCAGAAGAAAGACAAATTCGAACGGCCGGGAGAGCACGGCGTGGTATAG

Upstream 100 bases:

>100_bases
CCATGTTTACGGCCATCTTCGTTTCGCGGGCCATTTTTGAAGAATGGGCGCGCCATTGCGGTCCCAAGGGCCTGAGCATA
TAGCGCGCCGGGAGGCTGTC

Downstream 100 bases:

>100_bases
CCGCCGCATACATGTCTTGAATACTCAGGCCCCCGTAGCATTGATGCGGGGGCCTTTTTGCATAACATCTTTCACCGCTG
GGAGGAAAATGGCGGAGTTT

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MSFTFVKHDTNIDFIGKRYWVYGISVALILIGIASAIWGNGLKMGIDFAGGVIVQVQFQEPVADEALKKSLDIPALPGIS
TQRFGEGGRDYLLRFSSAENADATQLRTSVVDALAATFPGNAAEIVRLEIVGPKVGADLTNKALSALYYAILLIAVYISG
RFEQRWMAGVIMAGALWGGIYLAGLTGLSMGWLVMLALSITVLVCFVLRLNFALGAVVGLIHDVAITVGLLSLLDVEIDL
NVMAALMTLVGFSLNDTIIIYDRLRENLRATPELDMAHLINKSVNQTLSRTILTSGTTFLSTLALYLLGGGVIHDFALTM
LIGVVVGTASSIYVSSAMLLALGDTDFYVSLVQKKDKFERPGEHGVV

Sequences:

>Translated_367_residues
MSFTFVKHDTNIDFIGKRYWVYGISVALILIGIASAIWGNGLKMGIDFAGGVIVQVQFQEPVADEALKKSLDIPALPGIS
TQRFGEGGRDYLLRFSSAENADATQLRTSVVDALAATFPGNAAEIVRLEIVGPKVGADLTNKALSALYYAILLIAVYISG
RFEQRWMAGVIMAGALWGGIYLAGLTGLSMGWLVMLALSITVLVCFVLRLNFALGAVVGLIHDVAITVGLLSLLDVEIDL
NVMAALMTLVGFSLNDTIIIYDRLRENLRATPELDMAHLINKSVNQTLSRTILTSGTTFLSTLALYLLGGGVIHDFALTM
LIGVVVGTASSIYVSSAMLLALGDTDFYVSLVQKKDKFERPGEHGVV
>Mature_366_residues
SFTFVKHDTNIDFIGKRYWVYGISVALILIGIASAIWGNGLKMGIDFAGGVIVQVQFQEPVADEALKKSLDIPALPGIST
QRFGEGGRDYLLRFSSAENADATQLRTSVVDALAATFPGNAAEIVRLEIVGPKVGADLTNKALSALYYAILLIAVYISGR
FEQRWMAGVIMAGALWGGIYLAGLTGLSMGWLVMLALSITVLVCFVLRLNFALGAVVGLIHDVAITVGLLSLLDVEIDLN
VMAALMTLVGFSLNDTIIIYDRLRENLRATPELDMAHLINKSVNQTLSRTILTSGTTFLSTLALYLLGGGVIHDFALTML
IGVVVGTASSIYVSSAMLLALGDTDFYVSLVQKKDKFERPGEHGVV

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=346, Percent_Identity=37.2832369942197, Blast_Score=198, Evalue=4e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 39397; Mature: 39266

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFTFVKHDTNIDFIGKRYWVYGISVALILIGIASAIWGNGLKMGIDFAGGVIVQVQFQE
CCEEEEEECCCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEECC
PVADEALKKSLDIPALPGISTQRFGEGGRDYLLRFSSAENADATQLRTSVVDALAATFPG
CHHHHHHHHCCCCCCCCCCCHHHCCCCCHHHEEEECCCCCCHHHHHHHHHHHHHHHHCCC
NAAEIVRLEIVGPKVGADLTNKALSALYYAILLIAVYISGRFEQRWMAGVIMAGALWGGI
CCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
YLAGLTGLSMGWLVMLALSITVLVCFVLRLNFALGAVVGLIHDVAITVGLLSLLDVEIDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
NVMAALMTLVGFSLNDTIIIYDRLRENLRATPELDMAHLINKSVNQTLSRTILTSGTTFL
HHHHHHHHHHCCCCCCEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHH
STLALYLLGGGVIHDFALTMLIGVVVGTASSIYVSSAMLLALGDTDFYVSLVQKKDKFER
HHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHEEEEEECCCHHHHHHHHHHHHHCC
PGEHGVV
CCCCCCC
>Mature Secondary Structure 
SFTFVKHDTNIDFIGKRYWVYGISVALILIGIASAIWGNGLKMGIDFAGGVIVQVQFQE
CEEEEEECCCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEECC
PVADEALKKSLDIPALPGISTQRFGEGGRDYLLRFSSAENADATQLRTSVVDALAATFPG
CHHHHHHHHCCCCCCCCCCCHHHCCCCCHHHEEEECCCCCCHHHHHHHHHHHHHHHHCCC
NAAEIVRLEIVGPKVGADLTNKALSALYYAILLIAVYISGRFEQRWMAGVIMAGALWGGI
CCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
YLAGLTGLSMGWLVMLALSITVLVCFVLRLNFALGAVVGLIHDVAITVGLLSLLDVEIDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
NVMAALMTLVGFSLNDTIIIYDRLRENLRATPELDMAHLINKSVNQTLSRTILTSGTTFL
HHHHHHHHHHCCCCCCEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHH
STLALYLLGGGVIHDFALTMLIGVVVGTASSIYVSSAMLLALGDTDFYVSLVQKKDKFER
HHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHEEEEEECCCHHHHHHHHHHHHHCC
PGEHGVV
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]