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The map label for this gene is yiaN [C]

Identifier: 220904791

GI number: 220904791

Start: 1820247

End: 1821536

Strand: Reverse

Name: yiaN [C]

Synonym: Ddes_1523

Alternate gene names: 220904791

Gene position: 1821536-1820247 (Counterclockwise)

Preceding gene: 220904792

Following gene: 220904789

Centisome position: 63.39

GC content: 55.81

Gene sequence:

>1290_bases
ATGGAGCTGTTTATTTTTCTGGGAACTCTCTTTTTCTTTCTTGCTCTTGGCATTCCTATCGCTCTGGTTCTGGTGCTCTG
CGCCATAGTGCTCATGTGGCACTCCGGCATGTGGGACGCCATGATCATTCCAGGCAGCATGCTGGACGGGGCCAACAACT
ATCCCCTCATGGCCATTCCCTTTTTTGTGTTCGCCGGCGAAATCATGTCCGCGGGCGGCCTTTCAAAAAGGGTGGTGCAG
CTGGCCCAGCTCATGATCGGCCGGGTTCGCGGCGGGCTTGGCTATGCGGCCATTATCGCGAGTATTCTTTTTGCAGGTCT
TATGGGCAGCTCTGTTGGCGAAGCCGCGGCTTTGGGCGGGCTGCTGCTGCCCATGATGAAACAGGTGGGTTACCATCCGG
GCCGCGCCGGGGCTGTTATTGCCTCGGGCGCCATTCTTGGTCCCATCATTCCGCCGAGCACCAACTTCATTCTGCTTGGC
GCCACCATCAGCGGCCTTTCCATTACCAAGCTGTTCATGATCGGCCTTGTGCCCGGCATCATGATCGGTCTGGCACTCAT
GGTCGTGTGGTTCTTTGTGGTGCGCATCGACGGCTACAACGAAACCATCACCTTTACCAGGGCCGAAGCCATAAAGATTC
TCTTTGATGCAACCCCGGCCTTCATGATGCCGGTGCTGCTGCTGGGCGGTATCCGTTTCGGGATATTCACCCCCACTGAG
GGCGGCGCCTTTGCGGCCATCTACGCCATCGCGGTGTGCATGCTCTATTACCGCGAGCTTTCATTCCGCGATCTTTTGCG
TGTAAGCGCCCGCGCCGCGCATACCACGTCTGTGGTCATGCTGGTTGTTGCCGCAGCCACTGCGGTGGGCTGGTTTATCA
CCATTGCGCAGATACCCAATCAGATGACAGCGTTGTTTACCCCCCTGATTGACAATCCCATTATGCTGCTGCTGGCGATC
AACCTTTTCCTCTTCCTTATCGGCATGGTCATGGACCTGACGCCCAATATCCTGATCTTTGCGCCGGTGTTTTACCCGTT
GATCCAGCAGGCGGGCATTGACCCGTATTACTTCGGGCTGCTTTTTGTGCTCAACCTCGGTATCGGCGTCATTACTCCGC
CGGTGGGCACTGTGCTTTACGTTGTTTGCGGCATCGGCAATATCAAAATCACGCAACTGGTTGTTAAACTGGTTCCCTTC
ATTTTGATAGAAGTCGTTATGCTGCTCCTGCTGCTTTTCTTCCCCTCCCTGTCGCTTACGCCCCTCAACTGGCTTATGGG
CGGCAACTAG

Upstream 100 bases:

>100_bases
GCCCATCATGGCCTTTTGCGCCCTGATCTTCCAGCTGCGCTCCCTGGCGGTGCTCATACGCCGTCCGGCAGATACCTTCC
ATAAGGGATAGGAGAGAAAA

Downstream 100 bases:

>100_bases
GGCATTTCGGACTGAAAAGTTCTGGTCACTACAGAAAAGCCGCTCCGTAAGGAGCGGCTTTTTCATGGCGCGTCCAATCC
CGGCCATGGCCGGAAAAGTG

Product: TRAP dicarboxylate transporter subunit DctM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MELFIFLGTLFFFLALGIPIALVLVLCAIVLMWHSGMWDAMIIPGSMLDGANNYPLMAIPFFVFAGEIMSAGGLSKRVVQ
LAQLMIGRVRGGLGYAAIIASILFAGLMGSSVGEAAALGGLLLPMMKQVGYHPGRAGAVIASGAILGPIIPPSTNFILLG
ATISGLSITKLFMIGLVPGIMIGLALMVVWFFVVRIDGYNETITFTRAEAIKILFDATPAFMMPVLLLGGIRFGIFTPTE
GGAFAAIYAIAVCMLYYRELSFRDLLRVSARAAHTTSVVMLVVAAATAVGWFITIAQIPNQMTALFTPLIDNPIMLLLAI
NLFLFLIGMVMDLTPNILIFAPVFYPLIQQAGIDPYYFGLLFVLNLGIGVITPPVGTVLYVVCGIGNIKITQLVVKLVPF
ILIEVVMLLLLLFFPSLSLTPLNWLMGGN

Sequences:

>Translated_429_residues
MELFIFLGTLFFFLALGIPIALVLVLCAIVLMWHSGMWDAMIIPGSMLDGANNYPLMAIPFFVFAGEIMSAGGLSKRVVQ
LAQLMIGRVRGGLGYAAIIASILFAGLMGSSVGEAAALGGLLLPMMKQVGYHPGRAGAVIASGAILGPIIPPSTNFILLG
ATISGLSITKLFMIGLVPGIMIGLALMVVWFFVVRIDGYNETITFTRAEAIKILFDATPAFMMPVLLLGGIRFGIFTPTE
GGAFAAIYAIAVCMLYYRELSFRDLLRVSARAAHTTSVVMLVVAAATAVGWFITIAQIPNQMTALFTPLIDNPIMLLLAI
NLFLFLIGMVMDLTPNILIFAPVFYPLIQQAGIDPYYFGLLFVLNLGIGVITPPVGTVLYVVCGIGNIKITQLVVKLVPF
ILIEVVMLLLLLFFPSLSLTPLNWLMGGN
>Mature_429_residues
MELFIFLGTLFFFLALGIPIALVLVLCAIVLMWHSGMWDAMIIPGSMLDGANNYPLMAIPFFVFAGEIMSAGGLSKRVVQ
LAQLMIGRVRGGLGYAAIIASILFAGLMGSSVGEAAALGGLLLPMMKQVGYHPGRAGAVIASGAILGPIIPPSTNFILLG
ATISGLSITKLFMIGLVPGIMIGLALMVVWFFVVRIDGYNETITFTRAEAIKILFDATPAFMMPVLLLGGIRFGIFTPTE
GGAFAAIYAIAVCMLYYRELSFRDLLRVSARAAHTTSVVMLVVAAATAVGWFITIAQIPNQMTALFTPLIDNPIMLLLAI
NLFLFLIGMVMDLTPNILIFAPVFYPLIQQAGIDPYYFGLLFVLNLGIGVITPPVGTVLYVVCGIGNIKITQLVVKLVPF
ILIEVVMLLLLLFFPSLSLTPLNWLMGGN

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter large permease family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=425, Percent_Identity=45.1764705882353, Blast_Score=323, Evalue=1e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 45992; Mature: 45992

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELFIFLGTLFFFLALGIPIALVLVLCAIVLMWHSGMWDAMIIPGSMLDGANNYPLMAIP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHCCCCCCCCHHHHH
FFVFAGEIMSAGGLSKRVVQLAQLMIGRVRGGLGYAAIIASILFAGLMGSSVGEAAALGG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
LLLPMMKQVGYHPGRAGAVIASGAILGPIIPPSTNFILLGATISGLSITKLFMIGLVPGI
HHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
MIGLALMVVWFFVVRIDGYNETITFTRAEAIKILFDATPAFMMPVLLLGGIRFGIFTPTE
HHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHCCCHHHHHHHHHHCCHHEEEECCCC
GGAFAAIYAIAVCMLYYRELSFRDLLRVSARAAHTTSVVMLVVAAATAVGWFITIAQIPN
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
QMTALFTPLIDNPIMLLLAINLFLFLIGMVMDLTPNILIFAPVFYPLIQQAGIDPYYFGL
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCCHHHHHH
LFVLNLGIGVITPPVGTVLYVVCGIGNIKITQLVVKLVPFILIEVVMLLLLLFFPSLSLT
HHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PLNWLMGGN
CHHHCCCCC
>Mature Secondary Structure
MELFIFLGTLFFFLALGIPIALVLVLCAIVLMWHSGMWDAMIIPGSMLDGANNYPLMAIP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHCCCCCCCCHHHHH
FFVFAGEIMSAGGLSKRVVQLAQLMIGRVRGGLGYAAIIASILFAGLMGSSVGEAAALGG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
LLLPMMKQVGYHPGRAGAVIASGAILGPIIPPSTNFILLGATISGLSITKLFMIGLVPGI
HHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
MIGLALMVVWFFVVRIDGYNETITFTRAEAIKILFDATPAFMMPVLLLGGIRFGIFTPTE
HHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHCCCHHHHHHHHHHCCHHEEEECCCC
GGAFAAIYAIAVCMLYYRELSFRDLLRVSARAAHTTSVVMLVVAAATAVGWFITIAQIPN
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
QMTALFTPLIDNPIMLLLAINLFLFLIGMVMDLTPNILIFAPVFYPLIQQAGIDPYYFGL
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCCHHHHHH
LFVLNLGIGVITPPVGTVLYVVCGIGNIKITQLVVKLVPFILIEVVMLLLLLFFPSLSLT
HHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PLNWLMGGN
CHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]