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The map label for this gene is yiaM [C]

Identifier: 220904792

GI number: 220904792

Start: 1821546

End: 1822106

Strand: Reverse

Name: yiaM [C]

Synonym: Ddes_1524

Alternate gene names: 220904792

Gene position: 1822106-1821546 (Counterclockwise)

Preceding gene: 220904793

Following gene: 220904791

Centisome position: 63.41

GC content: 49.55

Gene sequence:

>561_bases
ATGCAAAACGAAAATTCAAAAGAATATCCCCCGGACCACGCTCCCGGAGTATACACCCTACATGAACCGGACCTGAATCC
GCCCAAAGAGACAAAAGCTCAGCTGCTTTTTGAAATTTTTTGTGCAGCGATTTTTTTGGGTATGATCGGCCTGGTTTTTT
ATAACGCTTTTCTGCGTTACGTTTTTTCGTCCAGCTATCCTCCCAGTGAGGAATGGGCGCGCTTTCTTTTCATTTACATC
ACGTTTTTCGGCGCCATCGAAGCTTTTTACCGCAACAAACACATTGCTGTGGACATGTTTGTGGTGCTGCTCAAGGGCGC
ATCGCGCAAGTATGTTGATATTACAGCATCACTTTGCAGCATTTTTGCCTTGGGGCTGCTGCTGTACGGCGGCATCGTCA
ACGTGTTGCAGACCATGGATACCTATTCCGTGGCCACGGATGTCAATATGGCCTTTATCAACGGCACCTTGCCCATCATG
GCCTTTTGCGCCCTGATCTTCCAGCTGCGCTCCCTGGCGGTGCTCATACGCCGTCCGGCAGATACCTTCCATAAGGGATA
G

Upstream 100 bases:

>100_bases
CAAAGGGCCAGAAAGCATTTTCCGGTCCTTTGTAGCAAGCAAGCCAGACAGGCCGTGCCGCATGACAGGCGGCTGCGTGC
CGTTTTCGCAGAGGTTGCAG

Downstream 100 bases:

>100_bases
GAGAGAAAAATGGAGCTGTTTATTTTTCTGGGAACTCTCTTTTTCTTTCTTGCTCTTGGCATTCCTATCGCTCTGGTTCT
GGTGCTCTGCGCCATAGTGC

Product: Tripartite ATP-independent periplasmic transporter DctQ component

Products: NA

Alternate protein names: TRAP Transporter Small Permease Protein; Tripartite ATP-Independent Periplasmic

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MQNENSKEYPPDHAPGVYTLHEPDLNPPKETKAQLLFEIFCAAIFLGMIGLVFYNAFLRYVFSSSYPPSEEWARFLFIYI
TFFGAIEAFYRNKHIAVDMFVVLLKGASRKYVDITASLCSIFALGLLLYGGIVNVLQTMDTYSVATDVNMAFINGTLPIM
AFCALIFQLRSLAVLIRRPADTFHKG

Sequences:

>Translated_186_residues
MQNENSKEYPPDHAPGVYTLHEPDLNPPKETKAQLLFEIFCAAIFLGMIGLVFYNAFLRYVFSSSYPPSEEWARFLFIYI
TFFGAIEAFYRNKHIAVDMFVVLLKGASRKYVDITASLCSIFALGLLLYGGIVNVLQTMDTYSVATDVNMAFINGTLPIM
AFCALIFQLRSLAVLIRRPADTFHKG
>Mature_186_residues
MQNENSKEYPPDHAPGVYTLHEPDLNPPKETKAQLLFEIFCAAIFLGMIGLVFYNAFLRYVFSSSYPPSEEWARFLFIYI
TFFGAIEAFYRNKHIAVDMFVVLLKGASRKYVDITASLCSIFALGLLLYGGIVNVLQTMDTYSVATDVNMAFINGTLPIM
AFCALIFQLRSLAVLIRRPADTFHKG

Specific function: Unknown

COG id: COG3090

COG function: function code G; TRAP-type C4-dicarboxylate transport system, small permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790002, Length=128, Percent_Identity=31.25, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20990; Mature: 20990

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNENSKEYPPDHAPGVYTLHEPDLNPPKETKAQLLFEIFCAAIFLGMIGLVFYNAFLRY
CCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFSSSYPPSEEWARFLFIYITFFGAIEAFYRNKHIAVDMFVVLLKGASRKYVDITASLCS
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
IFALGLLLYGGIVNVLQTMDTYSVATDVNMAFINGTLPIMAFCALIFQLRSLAVLIRRPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCH
DTFHKG
HHCCCC
>Mature Secondary Structure
MQNENSKEYPPDHAPGVYTLHEPDLNPPKETKAQLLFEIFCAAIFLGMIGLVFYNAFLRY
CCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFSSSYPPSEEWARFLFIYITFFGAIEAFYRNKHIAVDMFVVLLKGASRKYVDITASLCS
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
IFALGLLLYGGIVNVLQTMDTYSVATDVNMAFINGTLPIMAFCALIFQLRSLAVLIRRPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCH
DTFHKG
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA