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The map label for this gene is ccmK [H]

Identifier: 220904627

GI number: 220904627

Start: 1635047

End: 1635655

Strand: Direct

Name: ccmK [H]

Synonym: Ddes_1359

Alternate gene names: 220904627

Gene position: 1635047-1635655 (Clockwise)

Preceding gene: 220904626

Following gene: 220904628

Centisome position: 56.9

GC content: 60.1

Gene sequence:

>609_bases
ATGCTGGCACTGGGACTTATAGAAACAAAAGGGCTTGTAGGAGCCATTGAAGCGGCGGACGCCATGCTCAAGGCGGCCAA
TGTGCGCCTGCTTGAAAAAACGCTGGCGACCGGCGGCCTTGTGACCATCACCGTGGCAGGCGAAGTTTCGGCCGTGCAGT
CGGCTGTAGACGCGGCCCAGGCCTCGCTGTCCAGGCTGGAAGGCGCGGTCTGTGTTTCCTGCCACGTAATCCCCCGCCCT
GACGGCGAACTTGACCGCATACTGCTTCTGCAGCCCGGGCAATACACTATAGACCCGGACCCTGCAGCCGCCGCGCCGAA
AGCAGAAACAGCGGAAGTTGAAATAGTGGAACTTGTCGAGATTGTGGAAGAAATCCCGGCCCCCGCAGCCCCGAAAGGCG
GCGCGAAGGCCGAGACCAGCGGGAAGGCCCCGGCCCCTGAGGCGCAGGAAGCCTATGATCCCGAAAAATGCAAAACCATG
AGCATGAACAAACTTCGTCAGCTTGCCAAAGACATGAAGGTAGACCTCTCCCGTGAGCAGATCGCCTCGTCCAACAGGCA
AACCCTGATGAACGCCATCGACCGGGCGGCACGGAAGGAAAAGGAGTAG

Upstream 100 bases:

>100_bases
ATGCCGACTTGCAGCACATTGAGTCCATCCTCAGAACCTACGGGCTGGACGTGAAGGTCATCAGGCACTAGGGCATCTGC
CAAAAACAGGAGAATACGCC

Downstream 100 bases:

>100_bases
GACATGGTTGATAAGGATTTGCTTTCCATTCAAGAGGCCCGCGCCCTGGTTCGCGCAGCGCGCAAGGCCCAGCCCGAATT
CGCGCAGTTGAGCCAGGAAC

Product: microcompartments protein

Products: NA

Alternate protein names: Carboxysome shell protein CsoS1 [H]

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MLALGLIETKGLVGAIEAADAMLKAANVRLLEKTLATGGLVTITVAGEVSAVQSAVDAAQASLSRLEGAVCVSCHVIPRP
DGELDRILLLQPGQYTIDPDPAAAAPKAETAEVEIVELVEIVEEIPAPAAPKGGAKAETSGKAPAPEAQEAYDPEKCKTM
SMNKLRQLAKDMKVDLSREQIASSNRQTLMNAIDRAARKEKE

Sequences:

>Translated_202_residues
MLALGLIETKGLVGAIEAADAMLKAANVRLLEKTLATGGLVTITVAGEVSAVQSAVDAAQASLSRLEGAVCVSCHVIPRP
DGELDRILLLQPGQYTIDPDPAAAAPKAETAEVEIVELVEIVEEIPAPAAPKGGAKAETSGKAPAPEAQEAYDPEKCKTM
SMNKLRQLAKDMKVDLSREQIASSNRQTLMNAIDRAARKEKE
>Mature_202_residues
MLALGLIETKGLVGAIEAADAMLKAANVRLLEKTLATGGLVTITVAGEVSAVQSAVDAAQASLSRLEGAVCVSCHVIPRP
DGELDRILLLQPGQYTIDPDPAAAAPKAETAEVEIVELVEIVEEIPAPAAPKGGAKAETSGKAPAPEAQEAYDPEKCKTM
SMNKLRQLAKDMKVDLSREQIASSNRQTLMNAIDRAARKEKE

Specific function: May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered [H]

COG id: COG4577

COG function: function code QC; Carbon dioxide concentrating mechanism/carboxysome shell protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial microcompartments protein family [H]

Homologues:

Organism=Escherichia coli, GI87082108, Length=88, Percent_Identity=50, Blast_Score=68, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020808
- InterPro:   IPR000249 [H]

Pfam domain/function: PF00936 BMC [H]

EC number: NA

Molecular weight: Translated: 21208; Mature: 21208

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS00687 ALDEHYDE_DEHYDR_GLU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLALGLIETKGLVGAIEAADAMLKAANVRLLEKTLATGGLVTITVAGEVSAVQSAVDAAQ
CCEECEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHH
ASLSRLEGAVCVSCHVIPRPDGELDRILLLQPGQYTIDPDPAAAAPKAETAEVEIVELVE
HHHHHHCCEEEEEEEEEECCCCCCCEEEEECCCCEEECCCCCCCCCCCCCCHHHHHHHHH
IVEEIPAPAAPKGGAKAETSGKAPAPEAQEAYDPEKCKTMSMNKLRQLAKDMKVDLSREQ
HHHHCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
IASSNRQTLMNAIDRAARKEKE
HHCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLALGLIETKGLVGAIEAADAMLKAANVRLLEKTLATGGLVTITVAGEVSAVQSAVDAAQ
CCEECEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHH
ASLSRLEGAVCVSCHVIPRPDGELDRILLLQPGQYTIDPDPAAAAPKAETAEVEIVELVE
HHHHHHCCEEEEEEEEEECCCCCCCEEEEECCCCEEECCCCCCCCCCCCCCHHHHHHHHH
IVEEIPAPAAPKGGAKAETSGKAPAPEAQEAYDPEKCKTMSMNKLRQLAKDMKVDLSREQ
HHHHCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
IASSNRQTLMNAIDRAARKEKE
HHCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12917486 [H]