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The map label for this gene is exbD1 [H]

Identifier: 220904612

GI number: 220904612

Start: 1613536

End: 1613970

Strand: Reverse

Name: exbD1 [H]

Synonym: Ddes_1344

Alternate gene names: 220904612

Gene position: 1613970-1613536 (Counterclockwise)

Preceding gene: 220904613

Following gene: 220904611

Centisome position: 56.17

GC content: 49.2

Gene sequence:

>435_bases
ATGATCAGCGGGGGAAAAAGCCTGATAAGCAGAATTGGCGAAGAGGTCATGAACGGTATCAACGTTACGCCGTTGGTGGA
TGTCATGCTGGTGCTTCTGATTATATTCATCATTACCGCGCCGGTCATTCACCAGGCCTTCAAACCGGATTTGCCGAAAA
AAAATGCCCAGAAGCATCAATTGCAGGAAAATGACGTCACCATAGAAATTTCCGGTGCAGGTGCGTTCAGCCTTAATGGT
AAGCCCTTCACTGAAACAGCCCGGCTTGTAGAACTTCAGGGTTTTGGGGTGCGAGCAGGCAGCGACACCCGGCTTCATCT
TCATGCAGATCAGACTACACGATACACAAATATCGCCCGTGTACTTGCGTTGATGCAACAGGCTGGCCTGACAAAGGTCT
CATTTGTCACATCGGCTCCACAGAAAGCACAATAA

Upstream 100 bases:

>100_bases
AAGCCCCCGAACCGGGCATGTTCGCCCAGGATATTCAAACCTATCTTGTGATCGGACAACGTCTACTTTTTGTCCGGTAA
TCCCCATAGGGAGAGGTATT

Downstream 100 bases:

>100_bases
TTTGCCGTCATGGCATTAGCCTCAACTGGTGTCCTGTAATGCGAAATATCAGAGGAGAATGGGGTAATGGTAGGTAGAGC
AAGGATTGTTTCTGTGGTTG

Product: Biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MISGGKSLISRIGEEVMNGINVTPLVDVMLVLLIIFIITAPVIHQAFKPDLPKKNAQKHQLQENDVTIEISGAGAFSLNG
KPFTETARLVELQGFGVRAGSDTRLHLHADQTTRYTNIARVLALMQQAGLTKVSFVTSAPQKAQ

Sequences:

>Translated_144_residues
MISGGKSLISRIGEEVMNGINVTPLVDVMLVLLIIFIITAPVIHQAFKPDLPKKNAQKHQLQENDVTIEISGAGAFSLNG
KPFTETARLVELQGFGVRAGSDTRLHLHADQTTRYTNIARVLALMQQAGLTKVSFVTSAPQKAQ
>Mature_144_residues
MISGGKSLISRIGEEVMNGINVTPLVDVMLVLLIIFIITAPVIHQAFKPDLPKKNAQKHQLQENDVTIEISGAGAFSLNG
KPFTETARLVELQGFGVRAGSDTRLHLHADQTTRYTNIARVLALMQQAGLTKVSFVTSAPQKAQ

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=128, Percent_Identity=31.25, Blast_Score=72, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15604; Mature: 15604

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISGGKSLISRIGEEVMNGINVTPLVDVMLVLLIIFIITAPVIHQAFKPDLPKKNAQKHQ
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
LQENDVTIEISGAGAFSLNGKPFTETARLVELQGFGVRAGSDTRLHLHADQTTRYTNIAR
HCCCCEEEEECCCCEEECCCCCCHHHHHEEEECCCCEECCCCCEEEEECCCCHHHHHHHH
VLALMQQAGLTKVSFVTSAPQKAQ
HHHHHHHCCCCEEEEEECCCCCCC
>Mature Secondary Structure
MISGGKSLISRIGEEVMNGINVTPLVDVMLVLLIIFIITAPVIHQAFKPDLPKKNAQKHQ
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
LQENDVTIEISGAGAFSLNGKPFTETARLVELQGFGVRAGSDTRLHLHADQTTRYTNIAR
HCCCCEEEEECCCCEEECCCCCCHHHHHEEEECCCCEECCCCCEEEEECCCCHHHHHHHH
VLALMQQAGLTKVSFVTSAPQKAQ
HHHHHHHCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]