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The map label for this gene is ycbZ [H]

Identifier: 220904557

GI number: 220904557

Start: 1517129

End: 1519564

Strand: Direct

Name: ycbZ [H]

Synonym: Ddes_1288

Alternate gene names: 220904557

Gene position: 1517129-1519564 (Clockwise)

Preceding gene: 220904556

Following gene: 220904558

Centisome position: 52.8

GC content: 57.64

Gene sequence:

>2436_bases
ATGTCCAAAATCTCTCCCCTGCCCGAATCCAGACTGCATGCTGCCATGGACCCAGCCCGCATCCCCTGGGATGACAGCCA
TGCCATCCCTCCGCTGCGCAACGGGCGCAAAAATCCCTTCCAGCCCCGTGCCATGCAGGCGCTGGACCTTGCCCTGCAGA
TCAAGGCCCGCGGCTATCATATCTACCTTTCCGGCGAGGCTGATCTGGGCCGAACCCGTATGCTTCTTGACTATTTGCGC
CCGCAGGCCCGTAAAGCTCCCACCCCGCCGGACCTTGTCTACGTGCATAACTTTCAGGATCCGGACCACCCCCTGCTTTT
TTCCCTGCCTGCGGGCCTGGGGAAAAAATTCAGGCAACACATGGTGGAGATGGTGGATGCCGTCGTCAAGGAGCTGCCCC
GCAGGTTTGAGGCCAGCACGTACCTGAAGCGCCGGGCCAAGCTCGTGGACAAATTCCAGACAGCCCGCATGGGCCTGCTG
CGCAAAATGAACTCGGTAGCTGTGGACAAGGGCTTCAACCTGGATATGGATGAAAACGGGGGGCTTACGCTCTACCCCCT
TGTCGAGGGTAAAAGGCTCAATGAAGAAGAGTTTGACAACCTGGACAGCACCATCCGCCTCAAGCTGAAAAGCCGCGGCG
ACAACCTGGTGCAGTCCATGGCCGGCCTTATGCGCCAGCTGAACAAGGCTGAAGAAAGCTTTCAGGATGACGAGCGCGGC
CTTGAGCGCGAAGCCATGGGACAAGTGCTCGATGCCCTGTTTACCCCACTTGAACAGCGCCTGCTCAAGGCATGCCCTGG
TGATGAGCTGGCCGCCTACTTTACGGCCATGCGCGAAGACATGCTGAAAAATACCGAGGCGTTTCTGCACAGGGACGGCG
TACCGCCCTCCCTTACCGGAGATTCGCACGGCGGCCCCAGCGCAGACATGGTCCTGTATCGCTATGCCGTAAACGTGCTG
GTGGATAACAGCAAGCAGGAAGGCGCTCCCATTGTGGTCGATGACCATCCCACGGCCGTGAACCTTCTGGGCTGTATTGA
ACGCGAATCAGAAATGGGCGCGCTTGTCACGGACTTCACCCTGATCCGTGCAGGGAGCCTGCACAAGGCCAATGGCGGCT
TTCTGGTACTGCACGTCGAAGACCTTTTGCAGCATCCCACAGCCTGGGAAGGACTCTTACGTGCCCTGCGCTCTGATCAG
GCGCGCATTGAAGATACCGGCGAAGCACCGGACACCGCCATCCGGACCAAGGGGCTCAGCCCCGACCCTCTGCCCCTTGA
CCTCAAGGTTGTGCTCGTGGGCGGCGAAGAACTGTATGAAGGGCTGCTCGTCAATGACGACCGCTTTCCAAAGCTTTTTC
GCATCAAGGCGCACATGGCGGATGAAACAGAGCGTAATGCGGCAAACATCCGTCATTATCTCGGCCATATCGCGCACATC
ATACGGGGTTGCGAGCTTCCCCCCTTTGATCGCACGGCCCTGGCATGGCTCGTGGATCTGGGGTCACACCTTTGCGAAGA
TCAACGCCGCCTTTCGCTCAAATTTCCCCTGTTGCGCGAATTGATGATAGAGGCCTCTGCTCTGGCGCGCATAAAGGGAG
CCGCTGCTGTCAGCGCGCCCGTCATGGAAGAAACCCATGCCGCGCGCATTTATCGAGCCAATCTTGTGGAAGAAGTTTTC
ATGGAAGAATACGACCGCGAGCTCATCAAGGTGCGCACGTCCGGCACAGCCGTGGGCCAGGTCAACGGCCTTTCAGTAAC
CTGGCATGGAAACTTTGAGTTCGGCCTGCCCCACTGCATTTCATGTACTGTAGGCGTGGGACACGAAGGTATTATCGACC
TTGAGCGTGAGGCGGAGCTTGGCGGGCCCATTCACACCAAGGCCATGATGATCATAAAAAGCTACCTCACCGACCTTTTT
GCCCGCAAAAAACCTCTTGTTCTTTCCGGCTCTCTGTATTTTGAGCAGAGCTATGCGGGAATTGAAGGCGATTCCGCCTC
GGGCGCGGAACTGGTGGCCCTGCTTTCGGCTCTGGCCGATGTTCCCGTACGGCTTGATCTGGCTTTTACGGGTGCAGTCA
GCCATGCGGGCCAGATCATGGCTGTGGGCGGCGTCACACGCAAGGTGGAGGGCTTTTATAAAGTCTGTGCCAGACACGGT
CTGACCGGCACCCAGGGAGTCATCATTCCCTACGATAATGCAGACCACCTCATGCTCTCACCCGATGTTCTCCGGGCAGT
GGAAAACAAACAGTTCAGCATTTACGCAGTGCGTCGCATTGAAGAGGCCCTGCTGTTACTTACCGGCCTTGCCGCAGGTC
GCAGACTGAAAAATGGTGGTTTTTCACGCGGCAGCCTGTATGACCTCGTAGACAAAAGACTTGAACAACTGGGCGATTAC
GCACAAAATGCGTTCAGGAGAAGCAAACGCAGCTGA

Upstream 100 bases:

>100_bases
GCGCCGGTGGGGCCTTGAACTTGCCGGGGAAATTCTTGAGCAGGGCGGCAAAGGCATTCTCGAAAAACTTTATCGACAGT
CATAGGTATACTACATAGAT

Downstream 100 bases:

>100_bases
TTTTTCATACACATGGCGGATCACAAGGCACTGCAGTATTGACTTTACATGTTTTTACAGATAATACATTTAACTATAAG
TAAGTAATCAAAGGACTATC

Product: peptidase S16 lon domain-containing protein

Products: NA

Alternate protein names: ATP-dependent protease La homolog [H]

Number of amino acids: Translated: 811; Mature: 810

Protein sequence:

>811_residues
MSKISPLPESRLHAAMDPARIPWDDSHAIPPLRNGRKNPFQPRAMQALDLALQIKARGYHIYLSGEADLGRTRMLLDYLR
PQARKAPTPPDLVYVHNFQDPDHPLLFSLPAGLGKKFRQHMVEMVDAVVKELPRRFEASTYLKRRAKLVDKFQTARMGLL
RKMNSVAVDKGFNLDMDENGGLTLYPLVEGKRLNEEEFDNLDSTIRLKLKSRGDNLVQSMAGLMRQLNKAEESFQDDERG
LEREAMGQVLDALFTPLEQRLLKACPGDELAAYFTAMREDMLKNTEAFLHRDGVPPSLTGDSHGGPSADMVLYRYAVNVL
VDNSKQEGAPIVVDDHPTAVNLLGCIERESEMGALVTDFTLIRAGSLHKANGGFLVLHVEDLLQHPTAWEGLLRALRSDQ
ARIEDTGEAPDTAIRTKGLSPDPLPLDLKVVLVGGEELYEGLLVNDDRFPKLFRIKAHMADETERNAANIRHYLGHIAHI
IRGCELPPFDRTALAWLVDLGSHLCEDQRRLSLKFPLLRELMIEASALARIKGAAAVSAPVMEETHAARIYRANLVEEVF
MEEYDRELIKVRTSGTAVGQVNGLSVTWHGNFEFGLPHCISCTVGVGHEGIIDLEREAELGGPIHTKAMMIIKSYLTDLF
ARKKPLVLSGSLYFEQSYAGIEGDSASGAELVALLSALADVPVRLDLAFTGAVSHAGQIMAVGGVTRKVEGFYKVCARHG
LTGTQGVIIPYDNADHLMLSPDVLRAVENKQFSIYAVRRIEEALLLLTGLAAGRRLKNGGFSRGSLYDLVDKRLEQLGDY
AQNAFRRSKRS

Sequences:

>Translated_811_residues
MSKISPLPESRLHAAMDPARIPWDDSHAIPPLRNGRKNPFQPRAMQALDLALQIKARGYHIYLSGEADLGRTRMLLDYLR
PQARKAPTPPDLVYVHNFQDPDHPLLFSLPAGLGKKFRQHMVEMVDAVVKELPRRFEASTYLKRRAKLVDKFQTARMGLL
RKMNSVAVDKGFNLDMDENGGLTLYPLVEGKRLNEEEFDNLDSTIRLKLKSRGDNLVQSMAGLMRQLNKAEESFQDDERG
LEREAMGQVLDALFTPLEQRLLKACPGDELAAYFTAMREDMLKNTEAFLHRDGVPPSLTGDSHGGPSADMVLYRYAVNVL
VDNSKQEGAPIVVDDHPTAVNLLGCIERESEMGALVTDFTLIRAGSLHKANGGFLVLHVEDLLQHPTAWEGLLRALRSDQ
ARIEDTGEAPDTAIRTKGLSPDPLPLDLKVVLVGGEELYEGLLVNDDRFPKLFRIKAHMADETERNAANIRHYLGHIAHI
IRGCELPPFDRTALAWLVDLGSHLCEDQRRLSLKFPLLRELMIEASALARIKGAAAVSAPVMEETHAARIYRANLVEEVF
MEEYDRELIKVRTSGTAVGQVNGLSVTWHGNFEFGLPHCISCTVGVGHEGIIDLEREAELGGPIHTKAMMIIKSYLTDLF
ARKKPLVLSGSLYFEQSYAGIEGDSASGAELVALLSALADVPVRLDLAFTGAVSHAGQIMAVGGVTRKVEGFYKVCARHG
LTGTQGVIIPYDNADHLMLSPDVLRAVENKQFSIYAVRRIEEALLLLTGLAAGRRLKNGGFSRGSLYDLVDKRLEQLGDY
AQNAFRRSKRS
>Mature_810_residues
SKISPLPESRLHAAMDPARIPWDDSHAIPPLRNGRKNPFQPRAMQALDLALQIKARGYHIYLSGEADLGRTRMLLDYLRP
QARKAPTPPDLVYVHNFQDPDHPLLFSLPAGLGKKFRQHMVEMVDAVVKELPRRFEASTYLKRRAKLVDKFQTARMGLLR
KMNSVAVDKGFNLDMDENGGLTLYPLVEGKRLNEEEFDNLDSTIRLKLKSRGDNLVQSMAGLMRQLNKAEESFQDDERGL
EREAMGQVLDALFTPLEQRLLKACPGDELAAYFTAMREDMLKNTEAFLHRDGVPPSLTGDSHGGPSADMVLYRYAVNVLV
DNSKQEGAPIVVDDHPTAVNLLGCIERESEMGALVTDFTLIRAGSLHKANGGFLVLHVEDLLQHPTAWEGLLRALRSDQA
RIEDTGEAPDTAIRTKGLSPDPLPLDLKVVLVGGEELYEGLLVNDDRFPKLFRIKAHMADETERNAANIRHYLGHIAHII
RGCELPPFDRTALAWLVDLGSHLCEDQRRLSLKFPLLRELMIEASALARIKGAAAVSAPVMEETHAARIYRANLVEEVFM
EEYDRELIKVRTSGTAVGQVNGLSVTWHGNFEFGLPHCISCTVGVGHEGIIDLEREAELGGPIHTKAMMIIKSYLTDLFA
RKKPLVLSGSLYFEQSYAGIEGDSASGAELVALLSALADVPVRLDLAFTGAVSHAGQIMAVGGVTRKVEGFYKVCARHGL
TGTQGVIIPYDNADHLMLSPDVLRAVENKQFSIYAVRRIEEALLLLTGLAAGRRLKNGGFSRGSLYDLVDKRLEQLGDYA
QNAFRRSKRS

Specific function: Unknown

COG id: COG1067

COG function: function code O; Predicted ATP-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S16 family [H]

Homologues:

Organism=Escherichia coli, GI1787188, Length=502, Percent_Identity=31.8725099601594, Blast_Score=217, Evalue=3e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008269
- InterPro:   IPR001984
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 89949; Mature: 89817

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKISPLPESRLHAAMDPARIPWDDSHAIPPLRNGRKNPFQPRAMQALDLALQIKARGYH
CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEECCEE
IYLSGEADLGRTRMLLDYLRPQARKAPTPPDLVYVHNFQDPDHPLLFSLPAGLGKKFRQH
EEEECCCCCCHHHHHHHHHCHHHCCCCCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHH
MVEMVDAVVKELPRRFEASTYLKRRAKLVDKFQTARMGLLRKMNSVAVDKGFNLDMDENG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GLTLYPLVEGKRLNEEEFDNLDSTIRLKLKSRGDNLVQSMAGLMRQLNKAEESFQDDERG
CEEEEEECCCCCCCHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCHHHHC
LEREAMGQVLDALFTPLEQRLLKACPGDELAAYFTAMREDMLKNTEAFLHRDGVPPSLTG
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
DSHGGPSADMVLYRYAVNVLVDNSKQEGAPIVVDDHPTAVNLLGCIERESEMGALVTDFT
CCCCCCCHHHHHHHHHHHHHEECCCCCCCCEEECCCCCHHHHHHHHHHHHHCCHHHHHHH
LIRAGSLHKANGGFLVLHVEDLLQHPTAWEGLLRALRSDQARIEDTGEAPDTAIRTKGLS
HHCCCCCEECCCCEEEEEHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCC
PDPLPLDLKVVLVGGEELYEGLLVNDDRFPKLFRIKAHMADETERNAANIRHYLGHIAHI
CCCCCEEEEEEEECCHHHHCCEEECCCCCCCEEEEEHHHCCCHHHHHHHHHHHHHHHHHH
IRGCELPPFDRTALAWLVDLGSHLCEDQRRLSLKFPLLRELMIEASALARIKGAAAVSAP
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHCCHHHCCC
VMEETHAARIYRANLVEEVFMEEYDRELIKVRTSGTAVGQVNGLSVTWHGNFEFGLPHCI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCEEEEEECCCCCCCCCCE
SCTVGVGHEGIIDLEREAELGGPIHTKAMMIIKSYLTDLFARKKPLVLSGSLYFEQSYAG
EEEECCCCCCCEECCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCC
IEGDSASGAELVALLSALADVPVRLDLAFTGAVSHAGQIMAVGGVTRKVEGFYKVCARHG
CCCCCCCHHHHHHHHHHHHCCCEEEEEEEECHHHCCCCEEEECCHHHHHHHHHHHHHHCC
LTGTQGVIIPYDNADHLMLSPDVLRAVENKQFSIYAVRRIEEALLLLTGLAAGRRLKNGG
CCCCCEEEEECCCCCCEEECHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCHHCCCC
FSRGSLYDLVDKRLEQLGDYAQNAFRRSKRS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKISPLPESRLHAAMDPARIPWDDSHAIPPLRNGRKNPFQPRAMQALDLALQIKARGYH
CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEECCEE
IYLSGEADLGRTRMLLDYLRPQARKAPTPPDLVYVHNFQDPDHPLLFSLPAGLGKKFRQH
EEEECCCCCCHHHHHHHHHCHHHCCCCCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHH
MVEMVDAVVKELPRRFEASTYLKRRAKLVDKFQTARMGLLRKMNSVAVDKGFNLDMDENG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GLTLYPLVEGKRLNEEEFDNLDSTIRLKLKSRGDNLVQSMAGLMRQLNKAEESFQDDERG
CEEEEEECCCCCCCHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCHHHHC
LEREAMGQVLDALFTPLEQRLLKACPGDELAAYFTAMREDMLKNTEAFLHRDGVPPSLTG
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
DSHGGPSADMVLYRYAVNVLVDNSKQEGAPIVVDDHPTAVNLLGCIERESEMGALVTDFT
CCCCCCCHHHHHHHHHHHHHEECCCCCCCCEEECCCCCHHHHHHHHHHHHHCCHHHHHHH
LIRAGSLHKANGGFLVLHVEDLLQHPTAWEGLLRALRSDQARIEDTGEAPDTAIRTKGLS
HHCCCCCEECCCCEEEEEHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCC
PDPLPLDLKVVLVGGEELYEGLLVNDDRFPKLFRIKAHMADETERNAANIRHYLGHIAHI
CCCCCEEEEEEEECCHHHHCCEEECCCCCCCEEEEEHHHCCCHHHHHHHHHHHHHHHHHH
IRGCELPPFDRTALAWLVDLGSHLCEDQRRLSLKFPLLRELMIEASALARIKGAAAVSAP
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHCCHHHCCC
VMEETHAARIYRANLVEEVFMEEYDRELIKVRTSGTAVGQVNGLSVTWHGNFEFGLPHCI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCEEEEEECCCCCCCCCCE
SCTVGVGHEGIIDLEREAELGGPIHTKAMMIIKSYLTDLFARKKPLVLSGSLYFEQSYAG
EEEECCCCCCCEECCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCC
IEGDSASGAELVALLSALADVPVRLDLAFTGAVSHAGQIMAVGGVTRKVEGFYKVCARHG
CCCCCCCHHHHHHHHHHHHCCCEEEEEEEECHHHCCCCEEEECCHHHHHHHHHHHHHHCC
LTGTQGVIIPYDNADHLMLSPDVLRAVENKQFSIYAVRRIEEALLLLTGLAAGRRLKNGG
CCCCCEEEEECCCCCCEEECHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCHHCCCC
FSRGSLYDLVDKRLEQLGDYAQNAFRRSKRS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]