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The map label for this gene is ybgI [C]

Identifier: 220904519

GI number: 220904519

Start: 1469261

End: 1470055

Strand: Direct

Name: ybgI [C]

Synonym: Ddes_1250

Alternate gene names: 220904519

Gene position: 1469261-1470055 (Clockwise)

Preceding gene: 220904518

Following gene: 220904520

Centisome position: 51.13

GC content: 55.97

Gene sequence:

>795_bases
ATGCAACTAGCTGAATTAATTAAATCCATAGAAGAAATCGCTCCTCTGCAGGCTGCGGCTTCGTGGGACATTTCCGGCCC
TCAGGTAGCGGCTCTGCGTCAGGACATCAGCAGTATTGCCGTCTGCCTTGATCCTACGCCCGAATCTGTCAGGCAGGCTC
TTGACCTTGGCGCACAATTTGTTCTGAGCCATCACCCGCTTTCCCTCAAACCTGCCCTGCCATCGCAACTTGACACATAC
CACGAAGTTTTGCGTTTGCTCATACGCGCAGATATTCCCCTCTACGCCGCCCATACTTCGCTGGATGTGAACCCTCAAGG
TCCCGCAGGATGGCTCGCTGCAGATCTTGGCCTTGCAAACACAACAGTGCTTGAGCCGGTAAGCCAGCAGCAGACTGATA
GAAAACCAATGCTCGGCTATGGCCTCGTCGGCGACCTGCCGCAAGCTCTGGCTATCAGCGATATTATTCACGTCCTTGAA
AGCGTGCTTGACCTTTCCACAGCGACCCTCAGTGGGCCGCCTCCCGGAAAAATCCACCGGCTGGCCTACTGCACCGGCTC
CGGTTCATCATTGCTGTCTGCGGCCCACAAGGCCGGGGCGCAACTGTTTATTACCGGCGATGTAAAATACCATACTGCGC
TTGAGGCGGAAATCCCCCTGCTGGACGTGGGTCACCACAGTCTTGAAGAGGAAATGATGCGCCGCATGTGCCGTTTGCTC
CAGCAACAGCTTCAGGGTGTTGCCGTTCACTTCGTGCCCTCGGCATCGCCTTTTCGCGCTGTTGCCCTGTCATGA

Upstream 100 bases:

>100_bases
ACATCTTGTCGGTATCGATCAATTTTCTTTTCACGCCGGTGTTTTTAGGCGCTTTCTCTGCAGAGCAAGAAAGTGCCTTT
TTTTATGGTGAGGAACATTC

Downstream 100 bases:

>100_bases
CTATCAGGAGGTCTTTTTATAATGAGTAATGCCGTTTACTTTGATCAGATAAAGCAGCTTGTGGAGCTGCAAAAGGTTGA
TGACGCCATTTATGCGGTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MQLAELIKSIEEIAPLQAAASWDISGPQVAALRQDISSIAVCLDPTPESVRQALDLGAQFVLSHHPLSLKPALPSQLDTY
HEVLRLLIRADIPLYAAHTSLDVNPQGPAGWLAADLGLANTTVLEPVSQQQTDRKPMLGYGLVGDLPQALAISDIIHVLE
SVLDLSTATLSGPPPGKIHRLAYCTGSGSSLLSAAHKAGAQLFITGDVKYHTALEAEIPLLDVGHHSLEEEMMRRMCRLL
QQQLQGVAVHFVPSASPFRAVALS

Sequences:

>Translated_264_residues
MQLAELIKSIEEIAPLQAAASWDISGPQVAALRQDISSIAVCLDPTPESVRQALDLGAQFVLSHHPLSLKPALPSQLDTY
HEVLRLLIRADIPLYAAHTSLDVNPQGPAGWLAADLGLANTTVLEPVSQQQTDRKPMLGYGLVGDLPQALAISDIIHVLE
SVLDLSTATLSGPPPGKIHRLAYCTGSGSSLLSAAHKAGAQLFITGDVKYHTALEAEIPLLDVGHHSLEEEMMRRMCRLL
QQQLQGVAVHFVPSASPFRAVALS
>Mature_264_residues
MQLAELIKSIEEIAPLQAAASWDISGPQVAALRQDISSIAVCLDPTPESVRQALDLGAQFVLSHHPLSLKPALPSQLDTY
HEVLRLLIRADIPLYAAHTSLDVNPQGPAGWLAADLGLANTTVLEPVSQQQTDRKPMLGYGLVGDLPQALAISDIIHVLE
SVLDLSTATLSGPPPGKIHRLAYCTGSGSSLLSAAHKAGAQLFITGDVKYHTALEAEIPLLDVGHHSLEEEMMRRMCRLL
QQQLQGVAVHFVPSASPFRAVALS

Specific function: Unknown

COG id: COG0327

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0135 (NIF3) family [H]

Homologues:

Organism=Escherichia coli, GI1786928, Length=261, Percent_Identity=26.0536398467433, Blast_Score=75, Evalue=5e-15,
Organism=Saccharomyces cerevisiae, GI6321217, Length=273, Percent_Identity=25.6410256410256, Blast_Score=77, Evalue=3e-15,
Organism=Drosophila melanogaster, GI19921430, Length=259, Percent_Identity=27.027027027027, Blast_Score=83, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002678 [H]

Pfam domain/function: PF01784 NIF3 [H]

EC number: NA

Molecular weight: Translated: 28224; Mature: 28224

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLAELIKSIEEIAPLQAAASWDISGPQVAALRQDISSIAVCLDPTPESVRQALDLGAQF
CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHH
VLSHHPLSLKPALPSQLDTYHEVLRLLIRADIPLYAAHTSLDVNPQGPAGWLAADLGLAN
HHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCCHHHHHCCCCC
TTVLEPVSQQQTDRKPMLGYGLVGDLPQALAISDIIHVLESVLDLSTATLSGPPPGKIHR
HHHHCCHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
LAYCTGSGSSLLSAAHKAGAQLFITGDVKYHTALEAEIPLLDVGHHSLEEEMMRRMCRLL
EEEEECCCHHHHHHHHHCCCEEEEECCEEEEEEECCCCCEEECCCHHHHHHHHHHHHHHH
QQQLQGVAVHFVPSASPFRAVALS
HHHHCCEEEEEECCCCCCEEEECC
>Mature Secondary Structure
MQLAELIKSIEEIAPLQAAASWDISGPQVAALRQDISSIAVCLDPTPESVRQALDLGAQF
CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHH
VLSHHPLSLKPALPSQLDTYHEVLRLLIRADIPLYAAHTSLDVNPQGPAGWLAADLGLAN
HHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCCHHHHHCCCCC
TTVLEPVSQQQTDRKPMLGYGLVGDLPQALAISDIIHVLESVLDLSTATLSGPPPGKIHR
HHHHCCHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
LAYCTGSGSSLLSAAHKAGAQLFITGDVKYHTALEAEIPLLDVGHHSLEEEMMRRMCRLL
EEEEECCCHHHHHHHHHCCCEEEEECCEEEEEEECCCCCEEECCCHHHHHHHHHHHHHHH
QQQLQGVAVHFVPSASPFRAVALS
HHHHCCEEEEEECCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11792842 [H]