| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is 220904517
Identifier: 220904517
GI number: 220904517
Start: 1465892
End: 1467520
Strand: Direct
Name: 220904517
Synonym: Ddes_1248
Alternate gene names: NA
Gene position: 1465892-1467520 (Clockwise)
Preceding gene: 220904516
Following gene: 220904518
Centisome position: 51.02
GC content: 55.49
Gene sequence:
>1629_bases ATGAGCATCAAGGAAAGGAAGCTTCTGCAACGCTTCAAAAAAAGCTGCATGGTGGCGCTGCTTGCTGCCGGCATGCTGAT GGGTGCGGCCGGGGGGGCCAAAGCCATCGAATTTAAGGCACAGGGCGAATGGCTCATGGGCTTCGGCGTGGCTGACGCCC CCTTGGCGTCCCATGCGCGGACCCCGCAGGGCGGTTACGCAAAGGAAAAAGTTAACGACAACGATATGTTCGGCGCTGCG CAGCGTCTGCGTCTGCAGTTGGACGCCGTTGCTTCCGAAAATCTGTCCGGTACTGTTTTCTTTGAAATCGGCACCCAGAA CTGGGGCAAAGCCGATGAAGGCGGCGCTCTTGGTGCGGACGGCAGTAACGTCATCAAACTGAAAAACGCCTACCTTGACT GGATCATCCCCCAGACTGATGCCCGCGTCCGTATGGGTATCCAGGGCTTGGCTCTGCCTGACATGGCTGGCGGCTCTGCC GTGCTCGACGGTGACGTCGCTGCTATTGTCGGCAACTACAAATTTAATGAAAATGTCGGCCTCACCGCTTTCTGGGCGCG TCCGGTCAATGACAACTTTGATGCGGGAAAATACGGCAACGGCGATCACAAGGCGAAGAACAACTATCTGGATAACATTG ATCTTTTTGCCATAACCGTGCCTGTAACCTTTGATGGCGTGGAAGTAACGCCCTGGGCCATGTACGGCATGCTGGGCCGT AACGCCCTGCGCGGCCTGAGTGAAATTAATGATAACGAACCCTGGGAAACCAGCGACGGTATCCTTGGGCAGAGCCTGCC CGGCCTGACCGAAGGATTCAACTTTGCTGGTGCTACTCCGCTTGATTCCCGTGCAACCAGCAAGCAGTACGGCAACATGT TCTGGGTCGGTCTGCCCATCGGCATTACCATGTTCGACCCGCTCAATATCGAATTCGACATCAACTACGGCTATGTGGAA AGCATGGGCCGCTACGATGTGGTGAAGCGCGGCAACGATAGTGATGTGGTTCGCGGCAGTACCGAACGCCAGGGTTTTGT TGCCAAGGCTCTGGTAGAATACAAGATGGACTGGGCCACCCCCGGCATCTTTGGTTGGTACGGCTCCGGTGACGATGGCG ACATCAAGAACGGCTCCAAGCGCATGCCCTCCATTGCAGGTGCGGGCAATTTCACTTCTTTTGTGGGTGACGGCAACCTT GCCTGGGGTGCCGGTCCGGGCGACATCTGCGACTGGAATATGACGTATGCCGGTACCTGGGGTATTGGCGGCCAGTTGAA AGACATGAGCTTCATGGAAGATCTCAAACATACACTGCGCGTGGCCTACTGGGGAGGCACCAACGCTCCCTCCATGGTCA AGTATATGGAATCTGCCTCTTCCTGGAACAGTGGCTTCGGCGTGGATGGTCCTTACCTGACCACCAACGATGGCTTGCTG GAATTCAACCTGATCAACCAGTGGCAGATCTACGAAAATCTGGAAGCCAACTTTGAACTGGGCTATGTTGTCAATATGAT TGATAAGGATACCTGGAAGAAGGACGGCTACTACAGCGGCAGCGGCAACGGCTCGTTTGAAAAGCAGGACGCCTGGAAAG CGCAGCTCGTTTTTGCCTACAGCTTCTAG
Upstream 100 bases:
>100_bases ATTGCTCACCCCTACCTGAACGATATCGTTATGCAGCCCATAACGCGGAAGTGCAGAAATATTTCTGCGTAAACCGCGCA AACCATATGGAGGAAAAGGT
Downstream 100 bases:
>100_bases TTTCTGTTGAACAGACCGGGGCCTGATTCAGGCCCCGGCTAGTAAGGCCCACAACCGCGCGCGTCCCCTTCCCGTGCGCG TATTGATCCGCTGTCTTCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 542; Mature: 541
Protein sequence:
>542_residues MSIKERKLLQRFKKSCMVALLAAGMLMGAAGGAKAIEFKAQGEWLMGFGVADAPLASHARTPQGGYAKEKVNDNDMFGAA QRLRLQLDAVASENLSGTVFFEIGTQNWGKADEGGALGADGSNVIKLKNAYLDWIIPQTDARVRMGIQGLALPDMAGGSA VLDGDVAAIVGNYKFNENVGLTAFWARPVNDNFDAGKYGNGDHKAKNNYLDNIDLFAITVPVTFDGVEVTPWAMYGMLGR NALRGLSEINDNEPWETSDGILGQSLPGLTEGFNFAGATPLDSRATSKQYGNMFWVGLPIGITMFDPLNIEFDINYGYVE SMGRYDVVKRGNDSDVVRGSTERQGFVAKALVEYKMDWATPGIFGWYGSGDDGDIKNGSKRMPSIAGAGNFTSFVGDGNL AWGAGPGDICDWNMTYAGTWGIGGQLKDMSFMEDLKHTLRVAYWGGTNAPSMVKYMESASSWNSGFGVDGPYLTTNDGLL EFNLINQWQIYENLEANFELGYVVNMIDKDTWKKDGYYSGSGNGSFEKQDAWKAQLVFAYSF
Sequences:
>Translated_542_residues MSIKERKLLQRFKKSCMVALLAAGMLMGAAGGAKAIEFKAQGEWLMGFGVADAPLASHARTPQGGYAKEKVNDNDMFGAA QRLRLQLDAVASENLSGTVFFEIGTQNWGKADEGGALGADGSNVIKLKNAYLDWIIPQTDARVRMGIQGLALPDMAGGSA VLDGDVAAIVGNYKFNENVGLTAFWARPVNDNFDAGKYGNGDHKAKNNYLDNIDLFAITVPVTFDGVEVTPWAMYGMLGR NALRGLSEINDNEPWETSDGILGQSLPGLTEGFNFAGATPLDSRATSKQYGNMFWVGLPIGITMFDPLNIEFDINYGYVE SMGRYDVVKRGNDSDVVRGSTERQGFVAKALVEYKMDWATPGIFGWYGSGDDGDIKNGSKRMPSIAGAGNFTSFVGDGNL AWGAGPGDICDWNMTYAGTWGIGGQLKDMSFMEDLKHTLRVAYWGGTNAPSMVKYMESASSWNSGFGVDGPYLTTNDGLL EFNLINQWQIYENLEANFELGYVVNMIDKDTWKKDGYYSGSGNGSFEKQDAWKAQLVFAYSF >Mature_541_residues SIKERKLLQRFKKSCMVALLAAGMLMGAAGGAKAIEFKAQGEWLMGFGVADAPLASHARTPQGGYAKEKVNDNDMFGAAQ RLRLQLDAVASENLSGTVFFEIGTQNWGKADEGGALGADGSNVIKLKNAYLDWIIPQTDARVRMGIQGLALPDMAGGSAV LDGDVAAIVGNYKFNENVGLTAFWARPVNDNFDAGKYGNGDHKAKNNYLDNIDLFAITVPVTFDGVEVTPWAMYGMLGRN ALRGLSEINDNEPWETSDGILGQSLPGLTEGFNFAGATPLDSRATSKQYGNMFWVGLPIGITMFDPLNIEFDINYGYVES MGRYDVVKRGNDSDVVRGSTERQGFVAKALVEYKMDWATPGIFGWYGSGDDGDIKNGSKRMPSIAGAGNFTSFVGDGNLA WGAGPGDICDWNMTYAGTWGIGGQLKDMSFMEDLKHTLRVAYWGGTNAPSMVKYMESASSWNSGFGVDGPYLTTNDGLLE FNLINQWQIYENLEANFELGYVVNMIDKDTWKKDGYYSGSGNGSFEKQDAWKAQLVFAYSF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58924; Mature: 58793
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIKERKLLQRFKKSCMVALLAAGMLMGAAGGAKAIEFKAQGEWLMGFGVADAPLASHAR CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEECCCCCCHHHCCC TPQGGYAKEKVNDNDMFGAAQRLRLQLDAVASENLSGTVFFEIGTQNWGKADEGGALGAD CCCCCCCCCCCCCCHHHHHHHHHEEEEEHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCC GSNVIKLKNAYLDWIIPQTDARVRMGIQGLALPDMAGGSAVLDGDVAAIVGNYKFNENVG CCCEEEEECCEEEEEECCCCCCEEECCCCCCCCCCCCCCEEECCCEEEEEECEEECCCCC LTAFWARPVNDNFDAGKYGNGDHKAKNNYLDNIDLFAITVPVTFDGVEVTPWAMYGMLGR EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCEEECHHHHHHHHHH NALRGLSEINDNEPWETSDGILGQSLPGLTEGFNFAGATPLDSRATSKQYGNMFWVGLPI HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHCCEEEEEECC GITMFDPLNIEFDINYGYVESMGRYDVVKRGNDSDVVRGSTERQGFVAKALVEYKMDWAT CEEEECCCEEEEEECCHHHHCCCCEEHEECCCCCCEECCCCCCCCHHHHHHHHHHHCCCC PGIFGWYGSGDDGDIKNGSKRMPSIAGAGNFTSFVGDGNLAWGAGPGDICDWNMTYAGTW CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCCCCCCCCCEEEEEC GIGGQLKDMSFMEDLKHTLRVAYWGGTNAPSMVKYMESASSWNSGFGVDGPYLTTNDGLL CCCCCCCHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCEEECCCCEE EFNLINQWQIYENLEANFELGYVVNMIDKDTWKKDGYYSGSGNGSFEKQDAWKAQLVFAY EEEECCCEEEEECCCCCEEEEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCEEEEEEEE SF EC >Mature Secondary Structure SIKERKLLQRFKKSCMVALLAAGMLMGAAGGAKAIEFKAQGEWLMGFGVADAPLASHAR CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEECCCCCCHHHCCC TPQGGYAKEKVNDNDMFGAAQRLRLQLDAVASENLSGTVFFEIGTQNWGKADEGGALGAD CCCCCCCCCCCCCCHHHHHHHHHEEEEEHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCC GSNVIKLKNAYLDWIIPQTDARVRMGIQGLALPDMAGGSAVLDGDVAAIVGNYKFNENVG CCCEEEEECCEEEEEECCCCCCEEECCCCCCCCCCCCCCEEECCCEEEEEECEEECCCCC LTAFWARPVNDNFDAGKYGNGDHKAKNNYLDNIDLFAITVPVTFDGVEVTPWAMYGMLGR EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCEEECHHHHHHHHHH NALRGLSEINDNEPWETSDGILGQSLPGLTEGFNFAGATPLDSRATSKQYGNMFWVGLPI HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHCCEEEEEECC GITMFDPLNIEFDINYGYVESMGRYDVVKRGNDSDVVRGSTERQGFVAKALVEYKMDWAT CEEEECCCEEEEEECCHHHHCCCCEEHEECCCCCCEECCCCCCCCHHHHHHHHHHHCCCC PGIFGWYGSGDDGDIKNGSKRMPSIAGAGNFTSFVGDGNLAWGAGPGDICDWNMTYAGTW CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCCCCCCCCCEEEEEC GIGGQLKDMSFMEDLKHTLRVAYWGGTNAPSMVKYMESASSWNSGFGVDGPYLTTNDGLL CCCCCCCHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCEEECCCCEE EFNLINQWQIYENLEANFELGYVVNMIDKDTWKKDGYYSGSGNGSFEKQDAWKAQLVFAY EEEECCCEEEEECCCCCEEEEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCEEEEEEEE SF EC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA