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The map label for this gene is rpfG [H]

Identifier: 220904424

GI number: 220904424

Start: 1360517

End: 1362637

Strand: Direct

Name: rpfG [H]

Synonym: Ddes_1154

Alternate gene names: 220904424

Gene position: 1360517-1362637 (Clockwise)

Preceding gene: 220904423

Following gene: 220904425

Centisome position: 47.35

GC content: 56.15

Gene sequence:

>2121_bases
ATGAAAATTCAAGAGATGGATGTCCAAAGTGTCGTCAGCAAATACCAGTTGAGAAAAGCGGTGGTTGCGGCGGTAAGTCT
GGCGATTTTTTTGGTGGCGTCCGCTGTGGCGTACGTGCTGTGCACACTCCAGCTCAGGAATGTCACGCAGGATGTGTTAA
ACAGTCAGAGAGAGATAGAGCAGGTCTGGCTGGAAAAATCTCTTGAGGCTGTGCATACATGGCGCAACGGTCTTGTGGAG
CAGGCGCGTTTTGTCAGCTCAGCAGAAATGTTTCGCCTGTATGCGGTGGATGTTCGCAATCTTGGGCCTGATGGGGCTGC
CCGGCTTGCCGCGCCTGATGCGCAGGGGAGTGGCGATGAGGCTCTGCGCTCGCTGGCCGAACAGTTGCCGTATATGCAGG
ATCTGTTGCGGGACTTCGCAAAAAGCAGGCAGTGGACCGCAGCCCGCATCGTTCTGCCTGACGGCCAGCCGCTGGTCATA
CAGGAGCATGATGCTGCCCTTGGGGAAGCCCAGATAGACATGGTACGCAGGGCCATTGCTGGAAAATCAATTGTTTTTGG
TCCGGTGCGCGCCTTGGGGCAAAATCTTGTCATGGATCTTGCCGATCCGCTTTATGAGGTACTTGGGCAGGGCAGCACCG
TGCCTGTAGCGGCCTTGCTGGCCACCATACCCGTGGACAGGGCGCTGGCTTCCTTTTTGTCGTTGAGCCAGGAGCAGTAC
CGCGAAATCCGTCAGTGCATTGTACAGCAGCATGTTGAAAGCATGCAGGTAATAAGCCTGCGCGGCGGCAAGGCGGATCT
TTTCCCGTACCCTGCTGACCTGCAGGAGGGCAGCCTTGCCTTTAAGCGCAGGCAGGGCATTGCGGAACAGGGCGAAGTTT
ATTCTCTGGGCAGTTATGTAAGCGCCTTCAACTGGTGGATGGTGCTGGAAGTGCCTGTGGGTATCGTCGACTCTGTTCTG
GAGAGCCAGAGCAGGCAGATATACGGTCTTGGCGTTCTCGGCAGCCTGGGTACAGCCCTGTTGGTGGCGCTGGTGTGGGC
CGGCATTGCAGGACGTTCATACCGGGCCACAGCCAGACATTTTCAACGGCTTTATGCACTCATCAAGCAGCAGAAACTCA
TGCTCGACAGCGTGAACGCTTCTCTTCAGGCGGGCCTCATGCTTGCTGACAGCCGTGGGCGACTGCAGATGTGCAATCCG
GCTTTCAGCGCCATGACAGGCAAAAGTGAAACAGAGCTTGTGGGCAGTAACCTTTGCAGCGTGCTGCCCGATTCTGCCGC
AGAAACGCTGATGGAAGGCATGCAAAAAGTAGCAGAAGAAAAGGTTGAAGGAAGTCTTGAACTTTCGCTGGGACAGGATC
AGGACGCCCGTCTTTACAGGGTAACGCTCTTTCCCTTTGAGGATAGCTTGCAAGGAGAAATTTCAGAAACAGGCGGCTGC
GTTGGCATTTTCCAGGATATCACAGAGTTCCGCCGCCGGGCAGAGGCTGCCCGCGAGCGCCAGGCCAGCAGCATTGCGGC
CCTTGTGCGCGCCATTGAGAGTGTGGATGTAAACCTCATCGGTCATTCACAAAAAATGGAGCAAGTTGTGGAGTTGCTGG
CCGGAAGTCTGGATCTTCCCGACAAGGATAGAGAAACCTTGCGGCTTGCAGCGCGGCTTTCTCAGGTAGGCAAAATATTT
GTGCCTCACCACCTGCTGATCAAAACAGGTAAACTTACTCCGGAAGAGCAAAAAGAAGTCATGCGCGCTCCCGAGTATGC
GTACCGCGCCTTGTGTGATTTGCAGTTTGGCTTGCCCGTTCCGGATGCTGTGTACCAGATGGGTGAAAGGCTCGACGGTA
CCGGCCAGCCCCGCAAGCTCAGCGGCAACGATATTACGCCCAATGCGCGTATCCTGGCTGTGGTCAACGCTTTCTGTGCG
ATGGTCAGCCCCCGCTCATACCGGGCCGGTATGGAGCCTCAGGAGGCTATTATCCTGCTTAAGCGTGATCAGGGTTTTGA
TCAGGATGTGGTGGCGGCGCTTGCGACCTTGCCGGTCGACAGCCTGCAAAAGGCCATTGCCGCCACTGAAAAGCGGCATG
TACAAAATGGATGCGAGGCCCTGCCTGCCGCCACGGAATAG

Upstream 100 bases:

>100_bases
TGTCACACAGCAGGATCAGGCAGTATAGTCCACAATACTCGGTCAATGAGTCTGGCCGCTGGGCGCATCTTAAAGGGCGC
AAGCTGAAGTAGGAAAATTT

Downstream 100 bases:

>100_bases
TTTTTATCCTTCAGTGTCATGCGTATGAAAACCAACGGCCGCCCGTACGGGCGGCCGTTGGTTTTCATACGCATGACCGT
TTCTGTGGGCAGGTTTGATA

Product: putative PAS/PAC sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 706; Mature: 706

Protein sequence:

>706_residues
MKIQEMDVQSVVSKYQLRKAVVAAVSLAIFLVASAVAYVLCTLQLRNVTQDVLNSQREIEQVWLEKSLEAVHTWRNGLVE
QARFVSSAEMFRLYAVDVRNLGPDGAARLAAPDAQGSGDEALRSLAEQLPYMQDLLRDFAKSRQWTAARIVLPDGQPLVI
QEHDAALGEAQIDMVRRAIAGKSIVFGPVRALGQNLVMDLADPLYEVLGQGSTVPVAALLATIPVDRALASFLSLSQEQY
REIRQCIVQQHVESMQVISLRGGKADLFPYPADLQEGSLAFKRRQGIAEQGEVYSLGSYVSAFNWWMVLEVPVGIVDSVL
ESQSRQIYGLGVLGSLGTALLVALVWAGIAGRSYRATARHFQRLYALIKQQKLMLDSVNASLQAGLMLADSRGRLQMCNP
AFSAMTGKSETELVGSNLCSVLPDSAAETLMEGMQKVAEEKVEGSLELSLGQDQDARLYRVTLFPFEDSLQGEISETGGC
VGIFQDITEFRRRAEAARERQASSIAALVRAIESVDVNLIGHSQKMEQVVELLAGSLDLPDKDRETLRLAARLSQVGKIF
VPHHLLIKTGKLTPEEQKEVMRAPEYAYRALCDLQFGLPVPDAVYQMGERLDGTGQPRKLSGNDITPNARILAVVNAFCA
MVSPRSYRAGMEPQEAIILLKRDQGFDQDVVAALATLPVDSLQKAIAATEKRHVQNGCEALPAATE

Sequences:

>Translated_706_residues
MKIQEMDVQSVVSKYQLRKAVVAAVSLAIFLVASAVAYVLCTLQLRNVTQDVLNSQREIEQVWLEKSLEAVHTWRNGLVE
QARFVSSAEMFRLYAVDVRNLGPDGAARLAAPDAQGSGDEALRSLAEQLPYMQDLLRDFAKSRQWTAARIVLPDGQPLVI
QEHDAALGEAQIDMVRRAIAGKSIVFGPVRALGQNLVMDLADPLYEVLGQGSTVPVAALLATIPVDRALASFLSLSQEQY
REIRQCIVQQHVESMQVISLRGGKADLFPYPADLQEGSLAFKRRQGIAEQGEVYSLGSYVSAFNWWMVLEVPVGIVDSVL
ESQSRQIYGLGVLGSLGTALLVALVWAGIAGRSYRATARHFQRLYALIKQQKLMLDSVNASLQAGLMLADSRGRLQMCNP
AFSAMTGKSETELVGSNLCSVLPDSAAETLMEGMQKVAEEKVEGSLELSLGQDQDARLYRVTLFPFEDSLQGEISETGGC
VGIFQDITEFRRRAEAARERQASSIAALVRAIESVDVNLIGHSQKMEQVVELLAGSLDLPDKDRETLRLAARLSQVGKIF
VPHHLLIKTGKLTPEEQKEVMRAPEYAYRALCDLQFGLPVPDAVYQMGERLDGTGQPRKLSGNDITPNARILAVVNAFCA
MVSPRSYRAGMEPQEAIILLKRDQGFDQDVVAALATLPVDSLQKAIAATEKRHVQNGCEALPAATE
>Mature_706_residues
MKIQEMDVQSVVSKYQLRKAVVAAVSLAIFLVASAVAYVLCTLQLRNVTQDVLNSQREIEQVWLEKSLEAVHTWRNGLVE
QARFVSSAEMFRLYAVDVRNLGPDGAARLAAPDAQGSGDEALRSLAEQLPYMQDLLRDFAKSRQWTAARIVLPDGQPLVI
QEHDAALGEAQIDMVRRAIAGKSIVFGPVRALGQNLVMDLADPLYEVLGQGSTVPVAALLATIPVDRALASFLSLSQEQY
REIRQCIVQQHVESMQVISLRGGKADLFPYPADLQEGSLAFKRRQGIAEQGEVYSLGSYVSAFNWWMVLEVPVGIVDSVL
ESQSRQIYGLGVLGSLGTALLVALVWAGIAGRSYRATARHFQRLYALIKQQKLMLDSVNASLQAGLMLADSRGRLQMCNP
AFSAMTGKSETELVGSNLCSVLPDSAAETLMEGMQKVAEEKVEGSLELSLGQDQDARLYRVTLFPFEDSLQGEISETGGC
VGIFQDITEFRRRAEAARERQASSIAALVRAIESVDVNLIGHSQKMEQVVELLAGSLDLPDKDRETLRLAARLSQVGKIF
VPHHLLIKTGKLTPEEQKEVMRAPEYAYRALCDLQFGLPVPDAVYQMGERLDGTGQPRKLSGNDITPNARILAVVNAFCA
MVSPRSYRAGMEPQEAIILLKRDQGFDQDVVAALATLPVDSLQKAIAATEKRHVQNGCEALPAATE

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 77262; Mature: 77262

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS50112 PAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIQEMDVQSVVSKYQLRKAVVAAVSLAIFLVASAVAYVLCTLQLRNVTQDVLNSQREIE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVWLEKSLEAVHTWRNGLVEQARFVSSAEMFRLYAVDVRNLGPDGAARLAAPDAQGSGDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
ALRSLAEQLPYMQDLLRDFAKSRQWTAARIVLPDGQPLVIQEHDAALGEAQIDMVRRAIA
HHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHC
GKSIVFGPVRALGQNLVMDLADPLYEVLGQGSTVPVAALLATIPVDRALASFLSLSQEQY
CCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHCHHHH
REIRQCIVQQHVESMQVISLRGGKADLFPYPADLQEGSLAFKRRQGIAEQGEVYSLGSYV
HHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEHHHHH
SAFNWWMVLEVPVGIVDSVLESQSRQIYGLGVLGSLGTALLVALVWAGIAGRSYRATARH
HHHHHHEEEEECHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHH
FQRLYALIKQQKLMLDSVNASLQAGLMLADSRGRLQMCNPAFSAMTGKSETELVGSNLCS
HHHHHHHHHHHHHHHHHHCHHHHHCEEEECCCCCEEECCHHHHHHCCCCHHHHHHHHHHH
VLPDSAAETLMEGMQKVAEEKVEGSLELSLGQDQDARLYRVTLFPFEDSLQGEISETGGC
HCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEEEECCCCCCCCCHHHCCCC
VGIFQDITEFRRRAEAARERQASSIAALVRAIESVDVNLIGHSQKMEQVVELLAGSLDLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCCC
DKDRETLRLAARLSQVGKIFVPHHLLIKTGKLTPEEQKEVMRAPEYAYRALCDLQFGLPV
CCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHCHHHHHHHHHHHCCCCCC
PDAVYQMGERLDGTGQPRKLSGNDITPNARILAVVNAFCAMVSPRSYRAGMEPQEAIILL
CHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEE
KRDQGFDQDVVAALATLPVDSLQKAIAATEKRHVQNGCEALPAATE
ECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure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ECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]