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The map label for this gene is yocS [H]

Identifier: 220904406

GI number: 220904406

Start: 1335999

End: 1337069

Strand: Reverse

Name: yocS [H]

Synonym: Ddes_1136

Alternate gene names: 220904406

Gene position: 1337069-1335999 (Counterclockwise)

Preceding gene: 220904410

Following gene: 220904405

Centisome position: 46.53

GC content: 56.86

Gene sequence:

>1071_bases
ATGACTTCCAACTATTTATTGATAGTAACTTTTTTGTTCACACTCTTGCCATCCACACGCCAGTCTGACAGTATGCCGAT
GTCCGCATACTACGCCTCAGGCGGAGGAAACACAGACTTGTTGCGTCTTGCGATCATCATCAGCGCCGCCCTCACGCGCT
ACATGGGCCTTGTGGTTATTGCCTGTTCCGCTCTGGCCCTTTGGCGGCCCGAGCTTTTCCGGTGGGTTGCTCCATACGTT
ACCCCGCTTCTCGGACTTATCATGTTCGGCATGGGCATGACTCTACGCGTGGGAGACTTCAGCCATGTGCTGGCCCGCCC
ACGCCATATCGCTCTGGGCATAGCCGCCCAGTTTGGCCTGATGGCCCTGCTGGCCTTTGTTTTTTGCCATGCCTGCTCCC
TGCCGCCGGACATGGCCATGGGCCTTGTTCTCGTTGGCACAGCCCCCGGAGGCACCGCCTCCAATGTTCTGGCCTATATC
GCCAAAGGCGATGTGCCGTATGCCGTAACACTTACCTCCCTAGGTACTTTTCTCGCTCTTCTCTTCATGCCTGCCCTTAC
ATGGCTTCTCGGTGGCGTGTGGATACCTGTAGATGTGGGCGGCCTTGTGGTTTCCATCAGCAAAATAGTGGTGGTCCCCG
TACTTATGGGCCTTGCGGCACACCGTTTTTGTGGTGGCCTGACCCGTCGCGCCCTACCCTTTTTGCCCCTGCTTTCCGCC
CTGACCATTACACTGGTAGTGGCAGGCATTCTGGCAATAAATGCCGCAAACATCCTGCAGGCCGGTCTGGATATTTTTAT
GGCCGTCATCTGCCTCAATCTTGCCGGCCTTGCTTTGGGCAGCCTGCTGGCCCGGATTTTCCGGCTTGACCGCAGCACCG
GCCGCGCCTTGTGCCTTGCAGTGGGTACCAAAAATTCCGGGCTTGCCACTGCGCTTGCCCTGGCCCACTTTTCACCTGCG
GCAGCCATCGCCGGCGCCCTCTACAGCGTATGGCAGAACATTTCCGGAGCGCTGCTTTCCAATTTTTTTCATACCCGCCC
AATGGATATCACCCCAAACAAGGAACTGTAA

Upstream 100 bases:

>100_bases
GCGCGCCAAATGGGCGCGCTCCTAAAGAGACAGAGTATCTGCTTGGAGCAGCTTTTTCAAGTGAGACGCAGGCCGAACAT
TTGCCACGCAGGCCATGCTG

Downstream 100 bases:

>100_bases
TGGACTTCCGCTTTTCTCCTGTGCTTGGCGGCACCACTCTTGTTGCCGGCACGGCCATAGGCGCCGGTATGCTGGCCTTA
CCGATGGCCTCGGCCGGAAT

Product: Bile acid:sodium symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MTSNYLLIVTFLFTLLPSTRQSDSMPMSAYYASGGGNTDLLRLAIIISAALTRYMGLVVIACSALALWRPELFRWVAPYV
TPLLGLIMFGMGMTLRVGDFSHVLARPRHIALGIAAQFGLMALLAFVFCHACSLPPDMAMGLVLVGTAPGGTASNVLAYI
AKGDVPYAVTLTSLGTFLALLFMPALTWLLGGVWIPVDVGGLVVSISKIVVVPVLMGLAAHRFCGGLTRRALPFLPLLSA
LTITLVVAGILAINAANILQAGLDIFMAVICLNLAGLALGSLLARIFRLDRSTGRALCLAVGTKNSGLATALALAHFSPA
AAIAGALYSVWQNISGALLSNFFHTRPMDITPNKEL

Sequences:

>Translated_356_residues
MTSNYLLIVTFLFTLLPSTRQSDSMPMSAYYASGGGNTDLLRLAIIISAALTRYMGLVVIACSALALWRPELFRWVAPYV
TPLLGLIMFGMGMTLRVGDFSHVLARPRHIALGIAAQFGLMALLAFVFCHACSLPPDMAMGLVLVGTAPGGTASNVLAYI
AKGDVPYAVTLTSLGTFLALLFMPALTWLLGGVWIPVDVGGLVVSISKIVVVPVLMGLAAHRFCGGLTRRALPFLPLLSA
LTITLVVAGILAINAANILQAGLDIFMAVICLNLAGLALGSLLARIFRLDRSTGRALCLAVGTKNSGLATALALAHFSPA
AAIAGALYSVWQNISGALLSNFFHTRPMDITPNKEL
>Mature_355_residues
TSNYLLIVTFLFTLLPSTRQSDSMPMSAYYASGGGNTDLLRLAIIISAALTRYMGLVVIACSALALWRPELFRWVAPYVT
PLLGLIMFGMGMTLRVGDFSHVLARPRHIALGIAAQFGLMALLAFVFCHACSLPPDMAMGLVLVGTAPGGTASNVLAYIA
KGDVPYAVTLTSLGTFLALLFMPALTWLLGGVWIPVDVGGLVVSISKIVVVPVLMGLAAHRFCGGLTRRALPFLPLLSAL
TITLVVAGILAINAANILQAGLDIFMAVICLNLAGLALGSLLARIFRLDRSTGRALCLAVGTKNSGLATALALAHFSPAA
AIAGALYSVWQNISGALLSNFFHTRPMDITPNKEL

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=249, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=9e-23,
Organism=Homo sapiens, GI4506971, Length=291, Percent_Identity=25.085910652921, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI37537552, Length=114, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI24308414, Length=318, Percent_Identity=27.6729559748428, Blast_Score=68, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 37487; Mature: 37355

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSNYLLIVTFLFTLLPSTRQSDSMPMSAYYASGGGNTDLLRLAIIISAALTRYMGLVVI
CCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
ACSALALWRPELFRWVAPYVTPLLGLIMFGMGMTLRVGDFSHVLARPRHIALGIAAQFGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHCCHHHHHHHHHHHHH
MALLAFVFCHACSLPPDMAMGLVLVGTAPGGTASNVLAYIAKGDVPYAVTLTSLGTFLAL
HHHHHHHHHHHCCCCHHHHCCEEEEECCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHH
LFMPALTWLLGGVWIPVDVGGLVVSISKIVVVPVLMGLAAHRFCGGLTRRALPFLPLLSA
HHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTITLVVAGILAINAANILQAGLDIFMAVICLNLAGLALGSLLARIFRLDRSTGRALCLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
VGTKNSGLATALALAHFSPAAAIAGALYSVWQNISGALLSNFFHTRPMDITPNKEL
ECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
TSNYLLIVTFLFTLLPSTRQSDSMPMSAYYASGGGNTDLLRLAIIISAALTRYMGLVVI
CCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
ACSALALWRPELFRWVAPYVTPLLGLIMFGMGMTLRVGDFSHVLARPRHIALGIAAQFGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHCCHHHHHHHHHHHHH
MALLAFVFCHACSLPPDMAMGLVLVGTAPGGTASNVLAYIAKGDVPYAVTLTSLGTFLAL
HHHHHHHHHHHCCCCHHHHCCEEEEECCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHH
LFMPALTWLLGGVWIPVDVGGLVVSISKIVVVPVLMGLAAHRFCGGLTRRALPFLPLLSA
HHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTITLVVAGILAINAANILQAGLDIFMAVICLNLAGLALGSLLARIFRLDRSTGRALCLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
VGTKNSGLATALALAHFSPAAAIAGALYSVWQNISGALLSNFFHTRPMDITPNKEL
ECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]