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The map label for this gene is immR [H]

Identifier: 218905529

GI number: 218905529

Start: 4176857

End: 4177276

Strand: Direct

Name: immR [H]

Synonym: BCAH820_4414

Alternate gene names: 218905529

Gene position: 4176857-4177276 (Clockwise)

Preceding gene: 218905478

Following gene: 218905530

Centisome position: 78.77

GC content: 32.38

Gene sequence:

>420_bases
ATGACATTAGGTTATAAGTTGAAAAAAGAAAGAGAAAAACGAAATTGGTCTCAGAAATATGTTGCCGAAAAAATTGGTAT
TACAAATACCGTTCTTTCAAATTATGAACGTGACTACCGTGATCCCGATACAACAACATTAGGCAAGCTAGCCGATTTAT
ATGAAGTATCTACAGACGAACTATTAGATAGACCTAAAAAATTATCATCTCTTTCCAAGAAAGAAGAGCGCGATATTGCA
CGTGATTTAGAAAAAACATTAGAAGAACTAGAAAATAGTGAAGATGCTCTTATGTTTGATGGAGAACCAATCGACGAACA
TACAAAAGAAATGATTCGTATTTCTCTTGAAAACTCAATGCGTATGGCAAAACAATTAGCAAAACAAAAATTCACTCCTA
ACAAATATAAAAAAGACTGA

Upstream 100 bases:

>100_bases
CAACATTTAATTTAACTTTTAGTGAATAAAGTTTCACATAACGTGAAATGTTGATAAAATAATTAACGTAAAGACAAACA
TCGGAATGGAAGGATAAACT

Downstream 100 bases:

>100_bases
GTGGAGTGAATTTATGGACATCAAAGAATTCGTACTAAACATTACAGAAAAACACGGCACAACAAATCCATTTAAAATTG
CTAAAAACAAAGACATTATT

Product: immunity repressor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MTLGYKLKKEREKRNWSQKYVAEKIGITNTVLSNYERDYRDPDTTTLGKLADLYEVSTDELLDRPKKLSSLSKKEERDIA
RDLEKTLEELENSEDALMFDGEPIDEHTKEMIRISLENSMRMAKQLAKQKFTPNKYKKD

Sequences:

>Translated_139_residues
MTLGYKLKKEREKRNWSQKYVAEKIGITNTVLSNYERDYRDPDTTTLGKLADLYEVSTDELLDRPKKLSSLSKKEERDIA
RDLEKTLEELENSEDALMFDGEPIDEHTKEMIRISLENSMRMAKQLAKQKFTPNKYKKD
>Mature_138_residues
TLGYKLKKEREKRNWSQKYVAEKIGITNTVLSNYERDYRDPDTTTLGKLADLYEVSTDELLDRPKKLSSLSKKEERDIAR
DLEKTLEELENSEDALMFDGEPIDEHTKEMIRISLENSMRMAKQLAKQKFTPNKYKKD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 16382; Mature: 16251

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLGYKLKKEREKRNWSQKYVAEKIGITNTVLSNYERDYRDPDTTTLGKLADLYEVSTDE
CCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHH
LLDRPKKLSSLSKKEERDIARDLEKTLEELENSEDALMFDGEPIDEHTKEMIRISLENSM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHH
RMAKQLAKQKFTPNKYKKD
HHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TLGYKLKKEREKRNWSQKYVAEKIGITNTVLSNYERDYRDPDTTTLGKLADLYEVSTDE
CCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHH
LLDRPKKLSSLSKKEERDIARDLEKTLEELENSEDALMFDGEPIDEHTKEMIRISLENSM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHH
RMAKQLAKQKFTPNKYKKD
HHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]