Click here to switch to the map view.

The map label for this gene is ylbK [H]

Identifier: 218905058

GI number: 218905058

Start: 3782544

End: 3783335

Strand: Reverse

Name: ylbK [H]

Synonym: BCAH820_3942

Alternate gene names: 218905058

Gene position: 3783335-3782544 (Counterclockwise)

Preceding gene: 218905060

Following gene: 218905057

Centisome position: 71.35

GC content: 36.99

Gene sequence:

>792_bases
ATGAAAGAACCGAAAATTGGATTAGCTCTTGGATCTGGGGGCGCAAAAGGTTTTGCTCATATTGGTGTTATAAAGGTTTT
AAGGGAAAATGATATACCGATTCATTTGATTGCAGGAAGTAGTATGGGGGCTTTGGTAGGTACATTTTATGCAGCTAGTT
CAAACGTTGAAAGACTGTATAAACTGGCAAATGTTTTTAAGAGGAAATATTATTTAGATTTTACGGTTCCCAAAATGGGA
TTTATTGCTGGAAAACGTGTCAAAGATATGATTAAAATGTTTACATATAATAAAAATTTAGAAGAGTTAGATATCCCGAC
GGCTGTTGTGGCTACTGATATCTTGAAGGGGGAAAAAGTAGTTTTTACAAGTGGTCCAGTTGCAGAGGCGGTGAGAGCTA
GTATTTCTGTACCTGGAGTGTTTGTGCCAGAGAAAATAGATGGACGATTATTGGTAGATGGCGGAGTAATTGATCGCATC
CCAGTATCGGTTGTGAAAGAGTTAGGTGCCGATATTGTTATTGCTGTTGATGTATCCCCGATTAAAGTAAATGGAGAGGT
TACGTCTATTTATGATGTAATTATGCAGAGTATTGAAATTATGCAACATGAGCTTGTGATGAATCGGCAAATTGCATCTG
ATTTAATGATGCGCCCAGCTGTAGAACAATTTAGTTCTCGTGCTTTTACAAACATTGAAGACATTATTCGAGTTGGAGAG
GTAGAAGCGGAAAAGCATGTTGCAAATATTCATTTATTAATTGAGCAGTGGAAGGAGAAACATAATGTTTAA

Upstream 100 bases:

>100_bases
CCTTTGTCCCAAAAAACGTTCATTTCAGTATACGTGGATACGTAGTGAATTTAGACCATAAGTATGAAAAAGGAATGAAA
AAAATTAAAGGGTGAGAAAA

Downstream 100 bases:

>100_bases
GCGTTTTCGGTTTATATATGCAATTTTAATAGGGGTTATATTGGCAATGTTACTTGTTTATGTACGTCTGCCGTATTATA
TAACCAAACCAGGAATGGCT

Product: phospholipase, patatin family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MKEPKIGLALGSGGAKGFAHIGVIKVLRENDIPIHLIAGSSMGALVGTFYAASSNVERLYKLANVFKRKYYLDFTVPKMG
FIAGKRVKDMIKMFTYNKNLEELDIPTAVVATDILKGEKVVFTSGPVAEAVRASISVPGVFVPEKIDGRLLVDGGVIDRI
PVSVVKELGADIVIAVDVSPIKVNGEVTSIYDVIMQSIEIMQHELVMNRQIASDLMMRPAVEQFSSRAFTNIEDIIRVGE
VEAEKHVANIHLLIEQWKEKHNV

Sequences:

>Translated_263_residues
MKEPKIGLALGSGGAKGFAHIGVIKVLRENDIPIHLIAGSSMGALVGTFYAASSNVERLYKLANVFKRKYYLDFTVPKMG
FIAGKRVKDMIKMFTYNKNLEELDIPTAVVATDILKGEKVVFTSGPVAEAVRASISVPGVFVPEKIDGRLLVDGGVIDRI
PVSVVKELGADIVIAVDVSPIKVNGEVTSIYDVIMQSIEIMQHELVMNRQIASDLMMRPAVEQFSSRAFTNIEDIIRVGE
VEAEKHVANIHLLIEQWKEKHNV
>Mature_263_residues
MKEPKIGLALGSGGAKGFAHIGVIKVLRENDIPIHLIAGSSMGALVGTFYAASSNVERLYKLANVFKRKYYLDFTVPKMG
FIAGKRVKDMIKMFTYNKNLEELDIPTAVVATDILKGEKVVFTSGPVAEAVRASISVPGVFVPEKIDGRLLVDGGVIDRI
PVSVVKELGADIVIAVDVSPIKVNGEVTSIYDVIMQSIEIMQHELVMNRQIASDLMMRPAVEQFSSRAFTNIEDIIRVGE
VEAEKHVANIHLLIEQWKEKHNV

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656043, Length=181, Percent_Identity=34.8066298342541, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI260656041, Length=181, Percent_Identity=34.8066298342541, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI260656039, Length=181, Percent_Identity=34.8066298342541, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI260656037, Length=181, Percent_Identity=34.8066298342541, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI116256487, Length=181, Percent_Identity=34.8066298342541, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI148727335, Length=181, Percent_Identity=36.4640883977901, Blast_Score=112, Evalue=3e-25,
Organism=Homo sapiens, GI148727290, Length=181, Percent_Identity=36.4640883977901, Blast_Score=112, Evalue=3e-25,
Organism=Escherichia coli, GI226510936, Length=292, Percent_Identity=31.1643835616438, Blast_Score=135, Evalue=2e-33,
Organism=Caenorhabditis elegans, GI71997299, Length=256, Percent_Identity=28.90625, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI71997289, Length=256, Percent_Identity=28.90625, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI193204778, Length=164, Percent_Identity=26.8292682926829, Blast_Score=83, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6323581, Length=266, Percent_Identity=24.812030075188, Blast_Score=101, Evalue=1e-22,
Organism=Drosophila melanogaster, GI28571388, Length=273, Percent_Identity=29.3040293040293, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI281376913, Length=273, Percent_Identity=29.6703296703297, Blast_Score=98, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 28886; Mature: 28886

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEPKIGLALGSGGAKGFAHIGVIKVLRENDIPIHLIAGSSMGALVGTFYAASSNVERLY
CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCHHHHH
KLANVFKRKYYLDFTVPKMGFIAGKRVKDMIKMFTYNKNLEELDIPTAVVATDILKGEKV
HHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCEE
VFTSGPVAEAVRASISVPGVFVPEKIDGRLLVDGGVIDRIPVSVVKELGADIVIAVDVSP
EEECCCHHHHHHHHCCCCCEECCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEECCE
IKVNGEVTSIYDVIMQSIEIMQHELVMNRQIASDLMMRPAVEQFSSRAFTNIEDIIRVGE
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
VEAEKHVANIHLLIEQWKEKHNV
CHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKEPKIGLALGSGGAKGFAHIGVIKVLRENDIPIHLIAGSSMGALVGTFYAASSNVERLY
CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCHHHHH
KLANVFKRKYYLDFTVPKMGFIAGKRVKDMIKMFTYNKNLEELDIPTAVVATDILKGEKV
HHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHCCCEE
VFTSGPVAEAVRASISVPGVFVPEKIDGRLLVDGGVIDRIPVSVVKELGADIVIAVDVSP
EEECCCHHHHHHHHCCCCCEECCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEECCE
IKVNGEVTSIYDVIMQSIEIMQHELVMNRQIASDLMMRPAVEQFSSRAFTNIEDIIRVGE
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
VEAEKHVANIHLLIEQWKEKHNV
CHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]