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The map label for this gene is ylmD [H]

Identifier: 218905031

GI number: 218905031

Start: 3753994

End: 3754812

Strand: Reverse

Name: ylmD [H]

Synonym: BCAH820_3915

Alternate gene names: 218905031

Gene position: 3754812-3753994 (Counterclockwise)

Preceding gene: 218905032

Following gene: 218905030

Centisome position: 70.81

GC content: 36.75

Gene sequence:

>819_bases
ATGAGAGAACCATTTAAATATGTGGACGGTATACTGTATTTACAAGCGTGGAAAGAACTTGGAAACATTACTGCTGGATT
TACGACGAAAGATGGTGGGGTAAGTACGGGCTCCTTTCATGCGATGAATTTAGGATTACATGTGAATGATATTGCCGAGA
ACGTTCATGAAAATAGACGCATTTTAGCAAATAAGTTACAAAAACCATTAGAAAATTGGATTTGCTCTGAACAAGTTCAT
GATCATCATGTTGAAAAAGTAGGACAACAGGAAAAAGGAAGTGGCGTTTATTCATATGAAGACGGCATTTCAAAAACAGA
TGGCATTTATACGACTAATAATGATGTTCTTTTAACATCTTGTTACGCGGATTGTGTTCCACTCTATTTTTATGCGCCAT
CACATGATATGATAGGACTTGCGCATGCTGGATGGAAAGGGACTGTAAAAGAGATTGCAAAGGAAATGATTCAAAAATGG
AATGCAGAAGGGATTTCAAGTGATGAAATTCATGTTGCAATTGGACCAGCAATTGGATCTTGTTGTTACGTTGTTGATGA
TCGAGTGTTAACAGCAGCAGAGCAAGTAGTAAACGGTTCTGTTCCTTATAAAAAAGTTTCTGACGGACAGTACGCAATTG
ATTTAAAAGAAATTAATCGTATATTATGTGTACAAGCAGGCATAAAAGAAGAGAATATTGTAATGTCATCTCTTTGTACA
AGCTGTGAAGAACAACTGTTTTTCTCTCATCGTCGTGATCAAGGTAAGACAGGGAGAATGTTGAGTTTCATAGGTTTTAA
GGAGGATGAAAGCAAGTGA

Upstream 100 bases:

>100_bases
TCTTTTTTTTCTGTTAGGATTATGAAAAAATAAAAGTATGGTAAAATAGACAGGAAGTACCATGCTTTTTTATGTTATTT
TAATTAAAAGGAGCAGCCTT

Downstream 100 bases:

>100_bases
CAGTACAAACAAATTTAACAACTGTAAACGAAGCAATTAAACAATCTTGTGCGCGAGCGGGACGTTCTTTGCAAGATATT
AAACTCGTTGCGGTTACAAA

Product: conserved hypothetical protein TIGR00726

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MREPFKYVDGILYLQAWKELGNITAGFTTKDGGVSTGSFHAMNLGLHVNDIAENVHENRRILANKLQKPLENWICSEQVH
DHHVEKVGQQEKGSGVYSYEDGISKTDGIYTTNNDVLLTSCYADCVPLYFYAPSHDMIGLAHAGWKGTVKEIAKEMIQKW
NAEGISSDEIHVAIGPAIGSCCYVVDDRVLTAAEQVVNGSVPYKKVSDGQYAIDLKEINRILCVQAGIKEENIVMSSLCT
SCEEQLFFSHRRDQGKTGRMLSFIGFKEDESK

Sequences:

>Translated_272_residues
MREPFKYVDGILYLQAWKELGNITAGFTTKDGGVSTGSFHAMNLGLHVNDIAENVHENRRILANKLQKPLENWICSEQVH
DHHVEKVGQQEKGSGVYSYEDGISKTDGIYTTNNDVLLTSCYADCVPLYFYAPSHDMIGLAHAGWKGTVKEIAKEMIQKW
NAEGISSDEIHVAIGPAIGSCCYVVDDRVLTAAEQVVNGSVPYKKVSDGQYAIDLKEINRILCVQAGIKEENIVMSSLCT
SCEEQLFFSHRRDQGKTGRMLSFIGFKEDESK
>Mature_272_residues
MREPFKYVDGILYLQAWKELGNITAGFTTKDGGVSTGSFHAMNLGLHVNDIAENVHENRRILANKLQKPLENWICSEQVH
DHHVEKVGQQEKGSGVYSYEDGISKTDGIYTTNNDVLLTSCYADCVPLYFYAPSHDMIGLAHAGWKGTVKEIAKEMIQKW
NAEGISSDEIHVAIGPAIGSCCYVVDDRVLTAAEQVVNGSVPYKKVSDGQYAIDLKEINRILCVQAGIKEENIVMSSLCT
SCEEQLFFSHRRDQGKTGRMLSFIGFKEDESK

Specific function: Unknown

COG id: COG1496

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0124 family [H]

Homologues:

Organism=Homo sapiens, GI190194374, Length=251, Percent_Identity=32.6693227091633, Blast_Score=112, Evalue=4e-25,
Organism=Homo sapiens, GI190194372, Length=251, Percent_Identity=32.6693227091633, Blast_Score=112, Evalue=4e-25,
Organism=Escherichia coli, GI1788945, Length=257, Percent_Identity=29.9610894941634, Blast_Score=100, Evalue=7e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003730
- InterPro:   IPR011324 [H]

Pfam domain/function: PF02578 Cu-oxidase_4 [H]

EC number: NA

Molecular weight: Translated: 30260; Mature: 30260

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: PS00626 RCC1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREPFKYVDGILYLQAWKELGNITAGFTTKDGGVSTGSFHAMNLGLHVNDIAENVHENRR
CCCHHHHHHHHHHHHHHHHHCCEECCCEECCCCCCCCCEEEEEECEEHHHHHHHHHHHHH
ILANKLQKPLENWICSEQVHDHHVEKVGQQEKGSGVYSYEDGISKTDGIYTTNNDVLLTS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCEEECCCCCCCCCEEECCCCEEEEE
CYADCVPLYFYAPSHDMIGLAHAGWKGTVKEIAKEMIQKWNAEGISSDEIHVAIGPAIGS
HHHHHEEEEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC
CCYVVDDRVLTAAEQVVNGSVPYKKVSDGQYAIDLKEINRILCVQAGIKEENIVMSSLCT
EEEEHHHHHHHHHHHHHCCCCCCEEECCCCEEEEHHHHHHEEEHHCCCCCHHHHHHHHHH
SCEEQLFFSHRRDQGKTGRMLSFIGFKEDESK
HHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC
>Mature Secondary Structure
MREPFKYVDGILYLQAWKELGNITAGFTTKDGGVSTGSFHAMNLGLHVNDIAENVHENRR
CCCHHHHHHHHHHHHHHHHHCCEECCCEECCCCCCCCCEEEEEECEEHHHHHHHHHHHHH
ILANKLQKPLENWICSEQVHDHHVEKVGQQEKGSGVYSYEDGISKTDGIYTTNNDVLLTS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCEEECCCCCCCCCEEECCCCEEEEE
CYADCVPLYFYAPSHDMIGLAHAGWKGTVKEIAKEMIQKWNAEGISSDEIHVAIGPAIGS
HHHHHEEEEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC
CCYVVDDRVLTAAEQVVNGSVPYKKVSDGQYAIDLKEINRILCVQAGIKEENIVMSSLCT
EEEEHHHHHHHHHHHHHCCCCCCEEECCCCEEEEHHHHHHEEEHHCCCCCHHHHHHHHHH
SCEEQLFFSHRRDQGKTGRMLSFIGFKEDESK
HHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]