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The map label for this gene is ylmE [H]

Identifier: 218905030

GI number: 218905030

Start: 3753323

End: 3753997

Strand: Reverse

Name: ylmE [H]

Synonym: BCAH820_3914

Alternate gene names: 218905030

Gene position: 3753997-3753323 (Counterclockwise)

Preceding gene: 218905031

Following gene: 218905029

Centisome position: 70.79

GC content: 34.22

Gene sequence:

>675_bases
GTGACAGTACAAACAAATTTAACAACTGTAAACGAAGCAATTAAACAATCTTGTGCGCGAGCGGGACGTTCTTTGCAAGA
TATTAAACTCGTTGCGGTTACAAAAACGGTAGGAATTGAAAAAACAAACGAAGTAATTGAAGCTGGAATTATCGATTTAG
GTGAAAATAGAAATGAAGGTTTCTTACAGAAGTACGAACATTTCGGTTCAAAAGTGAATTGGCATTTTATTGGATCATTA
CAAACGAGAAAAGTAAAAGAAATTATTAATGAAATCGATTATTTACATTCATTAGATCGTCTTTCACTTGCAAAAGAAAT
TCAAAAACGTGCGAATAAGAAGGTGAAATGTTTTATTCAAGTGAAAACATCATCTGAAGAATCCAAGCAAGGATTGGCAA
TAGAAGAAACAGTTTCTTTTATTCAAAGTTTGCAAGAATTGGATAAGATTGAAGTGGTAGGATTAATGACAATGGCTCCG
TTTACAGAAGAAGAGGAAGAAATTAGACGCTGTTTTAAGGAGTTACGTATGCTACAAAAAGAGGTGCAGGGGCTAGAATT
ATTACATGCACCATGCAAAGAACTATCAATGGGAATGTCTAATGATTACACGATTGCAATTGAAGAAGGTGCTACATATA
TTCGTTTGGGGACGATTTTAGTAGGAAAAGCGTAA

Upstream 100 bases:

>100_bases
GTACAAGCTGTGAAGAACAACTGTTTTTCTCTCATCGTCGTGATCAAGGTAAGACAGGGAGAATGTTGAGTTTCATAGGT
TTTAAGGAGGATGAAAGCAA

Downstream 100 bases:

>100_bases
AAGGAAGGAGAATCTTATTATGAGTTGGTCAAAAGTAAAATACTTCTTTTTTGATACACCTGAAGAAAAAGAAGCAGCTC
AATATAGTTATGAAAAGGAG

Product: conserved hypothetical protein TIGR00044

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MTVQTNLTTVNEAIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFLQKYEHFGSKVNWHFIGSL
QTRKVKEIINEIDYLHSLDRLSLAKEIQKRANKKVKCFIQVKTSSEESKQGLAIEETVSFIQSLQELDKIEVVGLMTMAP
FTEEEEEIRRCFKELRMLQKEVQGLELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGKA

Sequences:

>Translated_224_residues
MTVQTNLTTVNEAIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFLQKYEHFGSKVNWHFIGSL
QTRKVKEIINEIDYLHSLDRLSLAKEIQKRANKKVKCFIQVKTSSEESKQGLAIEETVSFIQSLQELDKIEVVGLMTMAP
FTEEEEEIRRCFKELRMLQKEVQGLELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGKA
>Mature_223_residues
TVQTNLTTVNEAIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFLQKYEHFGSKVNWHFIGSLQ
TRKVKEIINEIDYLHSLDRLSLAKEIQKRANKKVKCFIQVKTSSEESKQGLAIEETVSFIQSLQELDKIEVVGLMTMAPF
TEEEEEIRRCFKELRMLQKEVQGLELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGKA

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=240, Percent_Identity=32.0833333333333, Blast_Score=106, Evalue=2e-23,
Organism=Escherichia coli, GI1789321, Length=228, Percent_Identity=33.3333333333333, Blast_Score=122, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI17533025, Length=241, Percent_Identity=29.8755186721992, Blast_Score=79, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6319435, Length=212, Percent_Identity=29.7169811320755, Blast_Score=80, Evalue=3e-16,
Organism=Drosophila melanogaster, GI45550861, Length=238, Percent_Identity=27.7310924369748, Blast_Score=85, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25308; Mature: 25176

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVQTNLTTVNEAIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG
CEEECCHHHHHHHHHHHHHHHCCCHHHEEEEEEEHHHCCCHHHHHHHHHHHCCCCCCCCH
FLQKYEHFGSKVNWHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQKRANKKVKCFIQ
HHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
VKTSSEESKQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQK
EECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
EVQGLELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGKA
HHHHHHHHHHCHHHHHCCCCCCEEEEEECCCCEEEEEEEEECCC
>Mature Secondary Structure 
TVQTNLTTVNEAIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG
EEECCHHHHHHHHHHHHHHHCCCHHHEEEEEEEHHHCCCHHHHHHHHHHHCCCCCCCCH
FLQKYEHFGSKVNWHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQKRANKKVKCFIQ
HHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
VKTSSEESKQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQK
EECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
EVQGLELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGKA
HHHHHHHHHHCHHHHHCCCCCCEEEEEECCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]