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The map label for this gene is rimM1 [H]

Identifier: 218904971

GI number: 218904971

Start: 3692262

End: 3692582

Strand: Reverse

Name: rimM1 [H]

Synonym: BCAH820_3855

Alternate gene names: 218904971

Gene position: 3692582-3692262 (Counterclockwise)

Preceding gene: 218904972

Following gene: 218904970

Centisome position: 69.64

GC content: 33.64

Gene sequence:

>321_bases
TTGACATTTGAAGGATACGGGAATGTAAATGAAGTAGAACAGTTTAAAGGTTCTCTTTTAAAAGTGCCTGAAGATCAATT
AGGTGAACTAGCTGAAGGTGAATATTACTATCATGAAATTATTGGTTGCAATGTTGTAACGGAAGAAGGAGAAGCGTTAG
GGACAATAAAGGAAGTTTTATCTCCTGGTGCAAATGATGTTTGGGTAATTAAACGTCCAAAAGGTCAAGATTTGTTAATT
CCTTATATTGATGATGTTGTGCTTCAAGTTAACATTGAGAATAAATTAGTAACCATTCATGTAATGGAAGGGCTACTATA
A

Upstream 100 bases:

>100_bases
TATAAAGTAGGGAATACGTTATACATATCGAATGAAAAAGGTGGAGAGCCTTTCCCAGTAAAGATTACTTCTCATCGTCA
ACATAAAACATTTGATTTTA

Downstream 100 bases:

>100_bases
TGAAAATTGACATTTTAACATTGTTTCCAGATATGTTTACAGGTGTGTTTGGATCTTCAATTTTAAAGAAAGCACAAGAA
AAAGAAGCGGTAGAGCTTCG

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 105

Protein sequence:

>106_residues
MTFEGYGNVNEVEQFKGSLLKVPEDQLGELAEGEYYYHEIIGCNVVTEEGEALGTIKEVLSPGANDVWVIKRPKGQDLLI
PYIDDVVLQVNIENKLVTIHVMEGLL

Sequences:

>Translated_106_residues
MTFEGYGNVNEVEQFKGSLLKVPEDQLGELAEGEYYYHEIIGCNVVTEEGEALGTIKEVLSPGANDVWVIKRPKGQDLLI
PYIDDVVLQVNIENKLVTIHVMEGLL
>Mature_105_residues
TFEGYGNVNEVEQFKGSLLKVPEDQLGELAEGEYYYHEIIGCNVVTEEGEALGTIKEVLSPGANDVWVIKRPKGQDLLIP
YIDDVVLQVNIENKLVTIHVMEGLL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 11820; Mature: 11688

Theoretical pI: Translated: 4.03; Mature: 4.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFEGYGNVNEVEQFKGSLLKVPEDQLGELAEGEYYYHEIIGCNVVTEEGEALGTIKEVL
CCCCCCCCHHHHHHHCCCEEECCHHHHCCCCCCCEEEEEEECCEEEECCCCHHHHHHHHH
SPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKLVTIHVMEGLL
CCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCEEEEEEEECCCC
>Mature Secondary Structure 
TFEGYGNVNEVEQFKGSLLKVPEDQLGELAEGEYYYHEIIGCNVVTEEGEALGTIKEVL
CCCCCCCHHHHHHHCCCEEECCHHHHCCCCCCCEEEEEEECCEEEECCCCHHHHHHHHH
SPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKLVTIHVMEGLL
CCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA