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The map label for this gene is rimM2 [H]

Identifier: 218904972

GI number: 218904972

Start: 3692572

End: 3692778

Strand: Reverse

Name: rimM2 [H]

Synonym: BCAH820_3856

Alternate gene names: 218904972

Gene position: 3692778-3692572 (Counterclockwise)

Preceding gene: 218904973

Following gene: 218904971

Centisome position: 69.64

GC content: 34.3

Gene sequence:

>207_bases
ATGACAAAATGGTTTAACGTAGGAAAAATTGTAAATACTCATGGCGTAAAAGGAGAAATTCGTGTGGTTTCTCGTACTGA
CTTTCCAGAAGAGCGATATAAAGTAGGGAATACGTTATACATATCGAATGAAAAAGGTGGAGAGCCTTTCCCAGTAAAGA
TTACTTCTCATCGTCAACATAAAACATTTGATTTTATTGACATTTGA

Upstream 100 bases:

>100_bases
TATTCCTCTCCCTTTTTTAACATTTAAAGAGAAGTTGCATGTTCCATATGAGAAATGGGGATGCTTAATTTATATAGAAA
CCAGGGGTGACATACTGTTT

Downstream 100 bases:

>100_bases
AGGATACGGGAATGTAAATGAAGTAGAACAGTTTAAAGGTTCTCTTTTAAAAGTGCCTGAAGATCAATTAGGTGAACTAG
CTGAAGGTGAATATTACTAT

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 68; Mature: 67

Protein sequence:

>68_residues
MTKWFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEKGGEPFPVKITSHRQHKTFDFIDI

Sequences:

>Translated_68_residues
MTKWFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEKGGEPFPVKITSHRQHKTFDFIDI
>Mature_67_residues
TKWFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEKGGEPFPVKITSHRQHKTFDFIDI

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 7894; Mature: 7763

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKWFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEKGGEPFPVKITSHRQH
CCCCCCCCEEEECCCCCCEEEEEECCCCCHHHEECCCEEEEECCCCCCCCEEEEECCCCC
KTFDFIDI
CCEEEEEC
>Mature Secondary Structure 
TKWFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEKGGEPFPVKITSHRQH
CCCCCCCEEEECCCCCCEEEEEECCCCCHHHEECCCEEEEECCCCCCCCEEEEECCCCC
KTFDFIDI
CCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA