| Definition | Bacillus cereus AH820, complete genome. |
|---|---|
| Accession | NC_011773 |
| Length | 5,302,683 |
Click here to switch to the map view.
The map label for this gene is oppD [H]
Identifier: 218902117
GI number: 218902117
Start: 965969
End: 966961
Strand: Direct
Name: oppD [H]
Synonym: BCAH820_0999
Alternate gene names: 218902117
Gene position: 965969-966961 (Clockwise)
Preceding gene: 218902116
Following gene: 218902118
Centisome position: 18.22
GC content: 41.29
Gene sequence:
>993_bases GTGTCTGAAAAACTACTAGAAGTGAAAAATTTAAAGACTTCTTTTTTCATAGAAAGTGGAGAAGTGGAAGCCGTTCGCGG CGTTACATTTCGTTTAAATAAAGGAGAAGTAGTTGGTATCGTTGGGGAGTCTGGAAGCGGAAAGAGTGTAATGGCGAAGT CCGTTATGTCTCTCGTTACGTCACCAGGGAAAGTGAAAGAAGGAGAGATTCTTTTTCATAATGAAAACATCCTTTCTAAA TCTGAAAAAGAATTACGTTCTATTAGAGGAAATCAAATTTCATTGATTTCCCAAGATCCAATGTCGGCGCTAAATCCAGT TGTGAAAATTGGGAAGCAAATGACAGAAGTAATTATACGTCATCAAAAAGTAAAAAAGAAAGAAGCAGAGCAGATCGCGG TTAACTTACTAAAACAAGTCGGTCTTTCGTCGCCAGAAGAAAGGGTAAAACAATATCCGCACGAACTAAGCGGTGGTATG AAGCAGCGGGTTATGATTGCGATGGCAATGTCTTGTAATCCAGATCTTCTCATTGCGGATGAACCGACGACAGCGCTTGA TGTAACGATCCAAGCACAAATACTAGATTTAATGAAAAACTTAAAAAATGAAACGAACATGGCGTTACTTCTTATTACGC ATGACTTAGGAATTGTCGCGCAAAACTGTACACGCGTTATCGTTATGTACGGCGGGCTTGTTATGGAAGAAGGACCTGTA CTTGATATTTTCCAATCGCCGAATCATCCATATACGAAAGGCCTATTAAACTCTCTGCCAAAAATAGCGAACGGCGTAAA AGAAAGACTCGCTCCTATTCAAGGTGTAACACCAAACTTATTAAACCCACCACAAGGTTGCCCATTCGCAGAGCGTTGCC CGCATGCGATGGACATTTGTGAAAAAGAACGTCCACCGTATTTTGAAATCGGAGACGGAAGGCGTTCCATGTGCTGGTTA AATGATAGGGCGGTAGGTGATTCCCATGCATGA
Upstream 100 bases:
>100_bases TACTAAGTTTTAACGTAATTGGTGAAGCATTGAAGAAAGCTTTCGCACCAAAAGGAGCTGGAAATGAAAACTAAAGTGTT AAGTGAAAGGAGGGAGAAGC
Downstream 100 bases:
>100_bases AGAAAACTTAATTGAAGTTCGGAACTTAAAAAAGTATTTTCCTATTAAAAAAGGACTATTCGGCAGAAAAACAGAGCAAT TAAAAGCAGTCGATGATTTA
Product: oligopeptide ABC transporter, ATP-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: Stage 0 sporulation protein KD [H]
Number of amino acids: Translated: 330; Mature: 329
Protein sequence:
>330_residues MSEKLLEVKNLKTSFFIESGEVEAVRGVTFRLNKGEVVGIVGESGSGKSVMAKSVMSLVTSPGKVKEGEILFHNENILSK SEKELRSIRGNQISLISQDPMSALNPVVKIGKQMTEVIIRHQKVKKKEAEQIAVNLLKQVGLSSPEERVKQYPHELSGGM KQRVMIAMAMSCNPDLLIADEPTTALDVTIQAQILDLMKNLKNETNMALLLITHDLGIVAQNCTRVIVMYGGLVMEEGPV LDIFQSPNHPYTKGLLNSLPKIANGVKERLAPIQGVTPNLLNPPQGCPFAERCPHAMDICEKERPPYFEIGDGRRSMCWL NDRAVGDSHA
Sequences:
>Translated_330_residues MSEKLLEVKNLKTSFFIESGEVEAVRGVTFRLNKGEVVGIVGESGSGKSVMAKSVMSLVTSPGKVKEGEILFHNENILSK SEKELRSIRGNQISLISQDPMSALNPVVKIGKQMTEVIIRHQKVKKKEAEQIAVNLLKQVGLSSPEERVKQYPHELSGGM KQRVMIAMAMSCNPDLLIADEPTTALDVTIQAQILDLMKNLKNETNMALLLITHDLGIVAQNCTRVIVMYGGLVMEEGPV LDIFQSPNHPYTKGLLNSLPKIANGVKERLAPIQGVTPNLLNPPQGCPFAERCPHAMDICEKERPPYFEIGDGRRSMCWL NDRAVGDSHA >Mature_329_residues SEKLLEVKNLKTSFFIESGEVEAVRGVTFRLNKGEVVGIVGESGSGKSVMAKSVMSLVTSPGKVKEGEILFHNENILSKS EKELRSIRGNQISLISQDPMSALNPVVKIGKQMTEVIIRHQKVKKKEAEQIAVNLLKQVGLSSPEERVKQYPHELSGGMK QRVMIAMAMSCNPDLLIADEPTTALDVTIQAQILDLMKNLKNETNMALLLITHDLGIVAQNCTRVIVMYGGLVMEEGPVL DIFQSPNHPYTKGLLNSLPKIANGVKERLAPIQGVTPNLLNPPQGCPFAERCPHAMDICEKERPPYFEIGDGRRSMCWLN DRAVGDSHA
Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9665248, Length=225, Percent_Identity=28, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI6005701, Length=210, Percent_Identity=27.1428571428571, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI27436953, Length=195, Percent_Identity=24.6153846153846, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI42741659, Length=237, Percent_Identity=27.8481012658228, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI27477115, Length=210, Percent_Identity=26.1904761904762, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI9955968, Length=222, Percent_Identity=29.2792792792793, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI153792144, Length=227, Percent_Identity=25.9911894273128, Blast_Score=69, Evalue=8e-12, Organism=Homo sapiens, GI9955966, Length=220, Percent_Identity=29.5454545454545, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI45243524, Length=220, Percent_Identity=29.5454545454545, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI42490749, Length=250, Percent_Identity=27.2, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI9961252, Length=223, Percent_Identity=27.3542600896861, Blast_Score=66, Evalue=5e-11, Organism=Homo sapiens, GI9961250, Length=223, Percent_Identity=27.3542600896861, Blast_Score=66, Evalue=5e-11, Organism=Homo sapiens, GI4505771, Length=223, Percent_Identity=27.3542600896861, Blast_Score=66, Evalue=5e-11, Organism=Homo sapiens, GI148612844, Length=227, Percent_Identity=27.3127753303965, Blast_Score=65, Evalue=9e-11, Organism=Homo sapiens, GI255708477, Length=227, Percent_Identity=27.3127753303965, Blast_Score=65, Evalue=1e-10, Organism=Escherichia coli, GI48994883, Length=318, Percent_Identity=49.0566037735849, Blast_Score=313, Evalue=7e-87, Organism=Escherichia coli, GI1789963, Length=314, Percent_Identity=49.6815286624204, Blast_Score=312, Evalue=2e-86, Organism=Escherichia coli, GI1787759, Length=328, Percent_Identity=45.1219512195122, Blast_Score=284, Evalue=6e-78, Organism=Escherichia coli, GI145693107, Length=264, Percent_Identity=45.8333333333333, Blast_Score=243, Evalue=2e-65, Organism=Escherichia coli, GI1788506, Length=261, Percent_Identity=45.9770114942529, Blast_Score=236, Evalue=1e-63, Organism=Escherichia coli, GI1787500, Length=314, Percent_Identity=38.8535031847134, Blast_Score=217, Evalue=1e-57, Organism=Escherichia coli, GI1789962, Length=329, Percent_Identity=32.8267477203647, Blast_Score=207, Evalue=9e-55, Organism=Escherichia coli, GI1787548, Length=304, Percent_Identity=35.1973684210526, Blast_Score=201, Evalue=8e-53, Organism=Escherichia coli, GI1787758, Length=326, Percent_Identity=33.7423312883436, Blast_Score=195, Evalue=4e-51, Organism=Escherichia coli, GI48994997, Length=259, Percent_Identity=34.7490347490347, Blast_Score=154, Evalue=6e-39, Organism=Escherichia coli, GI1789890, Length=234, Percent_Identity=36.3247863247863, Blast_Score=150, Evalue=1e-37, Organism=Escherichia coli, GI1787547, Length=261, Percent_Identity=32.183908045977, Blast_Score=137, Evalue=9e-34, Organism=Escherichia coli, GI1786398, Length=254, Percent_Identity=30.7086614173228, Blast_Score=120, Evalue=2e-28, Organism=Escherichia coli, GI1788225, Length=258, Percent_Identity=31.0077519379845, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1789891, Length=209, Percent_Identity=34.9282296650718, Blast_Score=113, Evalue=2e-26, Organism=Escherichia coli, GI1789032, Length=274, Percent_Identity=29.9270072992701, Blast_Score=111, Evalue=6e-26, Organism=Escherichia coli, GI1787029, Length=236, Percent_Identity=31.3559322033898, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI1786703, Length=236, Percent_Identity=30.9322033898305, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1786872, Length=215, Percent_Identity=33.4883720930233, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1788644, Length=265, Percent_Identity=32.0754716981132, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1787089, Length=238, Percent_Identity=30.672268907563, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1789672, Length=244, Percent_Identity=28.2786885245902, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1787105, Length=240, Percent_Identity=29.5833333333333, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI87081834, Length=245, Percent_Identity=31.8367346938775, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI1790162, Length=254, Percent_Identity=26.3779527559055, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1787370, Length=248, Percent_Identity=27.0161290322581, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI1789873, Length=213, Percent_Identity=30.0469483568075, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1787712, Length=256, Percent_Identity=27.734375, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1788450, Length=234, Percent_Identity=28.2051282051282, Blast_Score=88, Evalue=8e-19, Organism=Escherichia coli, GI87081791, Length=265, Percent_Identity=27.5471698113208, Blast_Score=88, Evalue=1e-18, Organism=Escherichia coli, GI1786563, Length=232, Percent_Identity=29.3103448275862, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI87081709, Length=261, Percent_Identity=26.4367816091954, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1788761, Length=244, Percent_Identity=25.4098360655738, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI87082267, Length=240, Percent_Identity=25.8333333333333, Blast_Score=85, Evalue=7e-18, Organism=Escherichia coli, GI1789991, Length=270, Percent_Identity=30, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1786345, Length=239, Percent_Identity=26.7782426778243, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787792, Length=212, Percent_Identity=29.2452830188679, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1787143, Length=248, Percent_Identity=30.6451612903226, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1786803, Length=226, Percent_Identity=25.2212389380531, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786319, Length=231, Percent_Identity=29.8701298701299, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1787112, Length=241, Percent_Identity=28.6307053941909, Blast_Score=78, Evalue=9e-16, Organism=Escherichia coli, GI48994943, Length=237, Percent_Identity=26.1603375527426, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1786698, Length=198, Percent_Identity=28.2828282828283, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI48995001, Length=212, Percent_Identity=27.8301886792453, Blast_Score=75, Evalue=8e-15, Organism=Escherichia coli, GI1790739, Length=258, Percent_Identity=24.4186046511628, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1788165, Length=227, Percent_Identity=24.2290748898678, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1790467, Length=243, Percent_Identity=24.6913580246914, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1790544, Length=244, Percent_Identity=24.5901639344262, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1790525, Length=241, Percent_Identity=24.896265560166, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1789864, Length=268, Percent_Identity=25.7462686567164, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1787164, Length=215, Percent_Identity=29.7674418604651, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI1787041, Length=222, Percent_Identity=24.7747747747748, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1790190, Length=215, Percent_Identity=24.6511627906977, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI1786253, Length=225, Percent_Identity=24.8888888888889, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1789586, Length=189, Percent_Identity=26.4550264550265, Blast_Score=63, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193209708, Length=218, Percent_Identity=32.5688073394495, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI25146777, Length=223, Percent_Identity=29.1479820627803, Blast_Score=85, Evalue=6e-17, Organism=Caenorhabditis elegans, GI193211015, Length=236, Percent_Identity=25.4237288135593, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71996809, Length=236, Percent_Identity=25.4237288135593, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193211017, Length=236, Percent_Identity=25.4237288135593, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17558664, Length=221, Percent_Identity=28.5067873303167, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71984940, Length=185, Percent_Identity=29.7297297297297, Blast_Score=73, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17569143, Length=223, Percent_Identity=29.1479820627803, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI115534520, Length=269, Percent_Identity=26.0223048327138, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI193202349, Length=224, Percent_Identity=25.8928571428571, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17541710, Length=235, Percent_Identity=27.6595744680851, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17569145, Length=219, Percent_Identity=27.8538812785388, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI212646699, Length=224, Percent_Identity=26.3392857142857, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17567265, Length=212, Percent_Identity=27.3584905660377, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI19920532, Length=222, Percent_Identity=27.027027027027, Blast_Score=76, Evalue=4e-14, Organism=Drosophila melanogaster, GI24580930, Length=222, Percent_Identity=27.027027027027, Blast_Score=76, Evalue=4e-14, Organism=Drosophila melanogaster, GI28574150, Length=184, Percent_Identity=28.2608695652174, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI116007328, Length=184, Percent_Identity=28.2608695652174, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24641565, Length=220, Percent_Identity=31.3636363636364, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI85726357, Length=269, Percent_Identity=26.3940520446097, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI17136662, Length=232, Percent_Identity=28.0172413793103, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24659289, Length=225, Percent_Identity=28, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI28574533, Length=221, Percent_Identity=26.6968325791855, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 36305; Mature: 36174
Theoretical pI: Translated: 7.85; Mature: 7.85
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEKLLEVKNLKTSFFIESGEVEAVRGVTFRLNKGEVVGIVGESGSGKSVMAKSVMSLVT CCCHHHHHHCCCEEEEEECCCEEEEECEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHC SPGKVKEGEILFHNENILSKSEKELRSIRGNQISLISQDPMSALNPVVKIGKQMTEVIIR CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH HQKVKKKEAEQIAVNLLKQVGLSSPEERVKQYPHELSGGMKQRVMIAMAMSCNPDLLIAD HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHCCCHHHHHHHHHEECCCCCEEEEC EPTTALDVTIQAQILDLMKNLKNETNMALLLITHDLGIVAQNCTRVIVMYGGLVMEEGPV CCCCEEEEEHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHEEEHHHCCEEECCCCE LDIFQSPNHPYTKGLLNSLPKIANGVKERLAPIQGVTPNLLNPPQGCPFAERCPHAMDIC EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHH EKERPPYFEIGDGRRSMCWLNDRAVGDSHA HCCCCCEEEECCCCCCEEEECCCCCCCCCC >Mature Secondary Structure SEKLLEVKNLKTSFFIESGEVEAVRGVTFRLNKGEVVGIVGESGSGKSVMAKSVMSLVT CCHHHHHHCCCEEEEEECCCEEEEECEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHC SPGKVKEGEILFHNENILSKSEKELRSIRGNQISLISQDPMSALNPVVKIGKQMTEVIIR CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH HQKVKKKEAEQIAVNLLKQVGLSSPEERVKQYPHELSGGMKQRVMIAMAMSCNPDLLIAD HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHCCCHHHHHHHHHEECCCCCEEEEC EPTTALDVTIQAQILDLMKNLKNETNMALLLITHDLGIVAQNCTRVIVMYGGLVMEEGPV CCCCEEEEEHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHEEEHHHCCEEECCCCE LDIFQSPNHPYTKGLLNSLPKIANGVKERLAPIQGVTPNLLNPPQGCPFAERCPHAMDIC EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHH EKERPPYFEIGDGRRSMCWLNDRAVGDSHA HCCCCCEEEECCCCCCEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1901616; 1899858; 9384377 [H]