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The map label for this gene is ykoE [H]

Identifier: 218884776

GI number: 218884776

Start: 1357115

End: 1357645

Strand: Direct

Name: ykoE [H]

Synonym: DKAM_1465

Alternate gene names: 218884776

Gene position: 1357115-1357645 (Clockwise)

Preceding gene: 218884772

Following gene: 218884777

Centisome position: 99.41

GC content: 45.57

Gene sequence:

>531_bases
ATGGATCAGGTAGTGAAAAAATATACAATAGTGGATGTATTATTACTCGGCGTTATCGCAGCCATATATAGCGTCCTCTT
CTACGTATGGTGGGATGTATATTATCTTATAAAAGCCATTGGCGGGCCCATCGTGGCTAGATTAATCACATATGGATTAT
GGTTTATGCCGGCCCCCCTGGCGGCATCTCTAATCCGTAAACCAGGGAGCGCGCTACTAGGCGAGTTCCTTCCAGCATTA
CTAGAATCAATAATACCTACTCCAGGCGGGTTAACGAATGCTATATATGGTATAGCGCAGGGAGTATTTAGCGAGGCATC
ATATGCAGCCTTTATATATAGAAGATATGGTTTGCTGCAGGCATGCCTAGCAGGGGCTTTACCAGCGGTACCAGCATTTA
TTCTAGACGCCCTGTTATTCGGTGATATCTACCCAGTTAACGAGGCAGTAGTGGTTATAGCGGCCATAGCGTTAAGTGGA
GCATTATACGGTGCAGCATCATACTTAGCGGCTAAGGTGGTTAAAGGCTGA

Upstream 100 bases:

>100_bases
TACCCAATGTAGTTGCTTTATATGATTGGTTTTGATAACATAGTAATTGAATATTTAATAACCATGATATAAATATAGAT
ATTAATACATGGTGATATAG

Downstream 100 bases:

>100_bases
GGAATGATAACTCGAAGTGTAACCCCGAAAACTACTGTTTTATATATGATTAAAAGCCTCTATACTCCTAAGAACTTAGT
AGTTTATCCCGGGATTTTAG

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MDQVVKKYTIVDVLLLGVIAAIYSVLFYVWWDVYYLIKAIGGPIVARLITYGLWFMPAPLAASLIRKPGSALLGEFLPAL
LESIIPTPGGLTNAIYGIAQGVFSEASYAAFIYRRYGLLQACLAGALPAVPAFILDALLFGDIYPVNEAVVVIAAIALSG
ALYGAASYLAAKVVKG

Sequences:

>Translated_176_residues
MDQVVKKYTIVDVLLLGVIAAIYSVLFYVWWDVYYLIKAIGGPIVARLITYGLWFMPAPLAASLIRKPGSALLGEFLPAL
LESIIPTPGGLTNAIYGIAQGVFSEASYAAFIYRRYGLLQACLAGALPAVPAFILDALLFGDIYPVNEAVVVIAAIALSG
ALYGAASYLAAKVVKG
>Mature_176_residues
MDQVVKKYTIVDVLLLGVIAAIYSVLFYVWWDVYYLIKAIGGPIVARLITYGLWFMPAPLAASLIRKPGSALLGEFLPAL
LESIIPTPGGLTNAIYGIAQGVFSEASYAAFIYRRYGLLQACLAGALPAVPAFILDALLFGDIYPVNEAVVVIAAIALSG
ALYGAASYLAAKVVKG

Specific function: Part of the ABC transporter complex ykoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. Could also transport other HMP-containing products. Probably responsible for the translocation of the substrate across the membrane (Probable)

COG id: COG4721

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017195 [H]

Pfam domain/function: PF09819 ABC_cobalt [H]

EC number: NA

Molecular weight: Translated: 18676; Mature: 18676

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQVVKKYTIVDVLLLGVIAAIYSVLFYVWWDVYYLIKAIGGPIVARLITYGLWFMPAPL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AASLIRKPGSALLGEFLPALLESIIPTPGGLTNAIYGIAQGVFSEASYAAFIYRRYGLLQ
HHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ACLAGALPAVPAFILDALLFGDIYPVNEAVVVIAAIALSGALYGAASYLAAKVVKG
HHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDQVVKKYTIVDVLLLGVIAAIYSVLFYVWWDVYYLIKAIGGPIVARLITYGLWFMPAPL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AASLIRKPGSALLGEFLPALLESIIPTPGGLTNAIYGIAQGVFSEASYAAFIYRRYGLLQ
HHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ACLAGALPAVPAFILDALLFGDIYPVNEAVVVIAAIALSGALYGAASYLAAKVVKG
HHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]