| Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
|---|---|
| Accession | NC_011766 |
| Length | 1,365,223 |
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The map label for this gene is 218884772
Identifier: 218884772
GI number: 218884772
Start: 1353610
End: 1354233
Strand: Direct
Name: 218884772
Synonym: DKAM_1461
Alternate gene names: NA
Gene position: 1353610-1354233 (Clockwise)
Preceding gene: 218884770
Following gene: 218884776
Centisome position: 99.15
GC content: 45.03
Gene sequence:
>624_bases ATGAGCTATAGAAGAGAGGAAACTGTTGGGGAGAAATTAAGGAAATTGTTCACAAATGATAAGGACCCAGTTGAGAAGAA GGCTATAATCGCCCAGTACAGAATAAAGACTGCGATAGGTAGGATAAACAACTACCTTGAAAAACTCTCTGAAAGAGACC GTGAATTATTTGAAATGATAGTTGAATCACTTACGAGGAAAGACGAGTTAAGGGCTAAAATGTACGCCAAGGAGGTAGCT GAAATAAGGAAGGTCAGTAAGCAATTACTCACCGTACAGTATGCATTAGAGCATGCCGCGTTAAAGCTTGAGACATTCAT AATATATGGTGGCGCTGTGAATGAGGTTGCACCGGTACTCGGTGTTATGAAGGAAGCGGTGAACATATTGAGGGGTGTGG CACCAGATATATGGATCGACCTACAGTACGCTGTGAGGGAACTAGAGACAGCCGTAGGCGCTGGAATCGTAGACTTAACC ACGGATATAGGAGTAGGTATGGACAGCGAGGCGAAGAAGGTATTAGAGGAGGCGAAGATCGTAGCAGAGCAGAAGATGAA GGAGAAGTTCGCGGAGCTACCGAAGACTATCGTTCCAGAGGGAGAAAGCGTAAAGAGCAGCTAG
Upstream 100 bases:
>100_bases AAATGTTTTCACCGGGAAAATCGGGCATGCCTCTTTTGTTACAAGGGATCCCAGGGTTTAAAAATAAATAATTGTGCATA AGCGTGATGGGGGAAATCTA
Downstream 100 bases:
>100_bases CCGGCTTTTTTACTTACATACTGTTCAATTAACTGTGATACTTTAAGGTCTATGTTTTTTCCGAGTACTCTTAGGGCATT TACTAGTTCATCTCTCTTTG
Product: Conserved protein implicated in secretion
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 207; Mature: 206
Protein sequence:
>207_residues MSYRREETVGEKLRKLFTNDKDPVEKKAIIAQYRIKTAIGRINNYLEKLSERDRELFEMIVESLTRKDELRAKMYAKEVA EIRKVSKQLLTVQYALEHAALKLETFIIYGGAVNEVAPVLGVMKEAVNILRGVAPDIWIDLQYAVRELETAVGAGIVDLT TDIGVGMDSEAKKVLEEAKIVAEQKMKEKFAELPKTIVPEGESVKSS
Sequences:
>Translated_207_residues MSYRREETVGEKLRKLFTNDKDPVEKKAIIAQYRIKTAIGRINNYLEKLSERDRELFEMIVESLTRKDELRAKMYAKEVA EIRKVSKQLLTVQYALEHAALKLETFIIYGGAVNEVAPVLGVMKEAVNILRGVAPDIWIDLQYAVRELETAVGAGIVDLT TDIGVGMDSEAKKVLEEAKIVAEQKMKEKFAELPKTIVPEGESVKSS >Mature_206_residues SYRREETVGEKLRKLFTNDKDPVEKKAIIAQYRIKTAIGRINNYLEKLSERDRELFEMIVESLTRKDELRAKMYAKEVAE IRKVSKQLLTVQYALEHAALKLETFIIYGGAVNEVAPVLGVMKEAVNILRGVAPDIWIDLQYAVRELETAVGAGIVDLTT DIGVGMDSEAKKVLEEAKIVAEQKMKEKFAELPKTIVPEGESVKSS
Specific function: Unknown
COG id: COG5491
COG function: function code N; Conserved protein implicated in secretion
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23343; Mature: 23212
Theoretical pI: Translated: 6.12; Mature: 6.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYRREETVGEKLRKLFTNDKDPVEKKAIIAQYRIKTAIGRINNYLEKLSERDRELFEMI CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VESLTRKDELRAKMYAKEVAEIRKVSKQLLTVQYALEHAALKLETFIIYGGAVNEVAPVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHH GVMKEAVNILRGVAPDIWIDLQYAVRELETAVGAGIVDLTTDIGVGMDSEAKKVLEEAKI HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHH VAEQKMKEKFAELPKTIVPEGESVKSS HHHHHHHHHHHHCCHHHCCCCCCCCCC >Mature Secondary Structure SYRREETVGEKLRKLFTNDKDPVEKKAIIAQYRIKTAIGRINNYLEKLSERDRELFEMI CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VESLTRKDELRAKMYAKEVAEIRKVSKQLLTVQYALEHAALKLETFIIYGGAVNEVAPVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHH GVMKEAVNILRGVAPDIWIDLQYAVRELETAVGAGIVDLTTDIGVGMDSEAKKVLEEAKI HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHH VAEQKMKEKFAELPKTIVPEGESVKSS HHHHHHHHHHHHCCHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA