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The map label for this gene is ychF [C]

Identifier: 218884643

GI number: 218884643

Start: 1242196

End: 1243428

Strand: Direct

Name: ychF [C]

Synonym: DKAM_1332

Alternate gene names: 218884643

Gene position: 1242196-1243428 (Clockwise)

Preceding gene: 218884627

Following gene: 218884660

Centisome position: 90.99

GC content: 44.44

Gene sequence:

>1233_bases
ATGCCGCCTCCAGAGAAGATAATAGGGATAGTTGGAAAAACAAATGTGGGTAAGTCAACCTTGTTTTCAGCCATAACGCT
TCTACCGGTGAAGATAGCCAATCACCCCTTCACAACAATAGAGCCGAATATAGGGGTGGGACACGTTAGAGTGAGATGTG
TCCACACCGAGATAGGGTTACCTAGGTGTGATCCACGTGCAGGCTTCTGTATCTCGGGTGAGAGGTTCATCCCGGTTAAG
ATAATCGATGTAGCCGGTCTCATACCAGGGGCGAGCATGGGTAGAGGGCTTGGAAATAAGTTCATGGATGACCTGAGGCA
AGCAGATGTTCTCATACACGTGGTTGACGCATCGGGTTCAACAGACCTGGAGGGCAATCCAGCTGCTCCTGGAACACATG
ATCCTGTTGAAGAAGCTGAGAATATACTTCACGAGATAAATGAGTGGTTTAAGAACATTGTTACACGGATCTGGGAGTCT
AAGATCTCCAGGTTCCTTGCTTCAACTCAGGCATCACTAGACTTGATAACTCAGAATCTCTCAGGGCTGAGTGTTAGAAG
ACAACATGTTATAGAAGCCATTAAAAAAGCAGGCTTAGAGGACAAGCCCTTTAAAAACTGGAGTCTCACCGATGTAGCGG
ATTTCGCGGTTGCATTAAGAGAGGTGAGTAAACCCATTCTCATAGCGGCTAATAAGATAGATACACCTGTGGCAGTAGAA
TATGTAAGGGCCTTGAAAAAGAGGTTTGGCGAGGAAAATGTTGTTCCTGTAAGCGCGCTAGGGGAATACATCCTGAGGAA
GGCGAGTCAAGGTGAGTTAATAGAGTATATACCGGGAGACTCGATGTTTAGAATTAAGGATTCATCGAGGCTTACCAGTG
ATCAATTAAAGGTACTTAAGCTTATAGAGGACAATGTTCTTAAACAATATGGTTCAACAGGGGTTCAGCAATTACTCAAT
CATGCCGTATTCAGGAAGCTTGGGTTAATAGTGGTATATCCTGTTGAGGATGAGAATAAGTTTACGGATCACCATGGAAA
TATATTGCCAGATGCTTACCTAGTGCCTAGGAACACTACTGCTAGAGAACTTGCATACATGATTCATACAGAGCTCGGTG
AAGGCTTCCTCTACGCTGTTAACGCTAGAAGTAAGAGGAGGATTGGAGAGGATTATGTGCTTGAGAACAATGATATCATT
AAGATTGTAGCGGTTAAATCCAGGAGCAGTTAG

Upstream 100 bases:

>100_bases
ATGCTCTTAGACATAGCTAAGCACCGTGACCTAGGTGTATATAATAATGAGTTAACGGGGTTTATAAAAAATAGGCTAAA
ACTGTGGCGAGGAAGCGTAG

Downstream 100 bases:

>100_bases
GATAATTAAACATCAATGCGTGCCAGGGATCTGCTTGAATATTTTTTCCCAGTACCTCTTAGCCTCCTTATAGTAATAAT
CATCCTGCTTCCTCCCGCCA

Product: translation-associated GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 409

Protein sequence:

>410_residues
MPPPEKIIGIVGKTNVGKSTLFSAITLLPVKIANHPFTTIEPNIGVGHVRVRCVHTEIGLPRCDPRAGFCISGERFIPVK
IIDVAGLIPGASMGRGLGNKFMDDLRQADVLIHVVDASGSTDLEGNPAAPGTHDPVEEAENILHEINEWFKNIVTRIWES
KISRFLASTQASLDLITQNLSGLSVRRQHVIEAIKKAGLEDKPFKNWSLTDVADFAVALREVSKPILIAANKIDTPVAVE
YVRALKKRFGEENVVPVSALGEYILRKASQGELIEYIPGDSMFRIKDSSRLTSDQLKVLKLIEDNVLKQYGSTGVQQLLN
HAVFRKLGLIVVYPVEDENKFTDHHGNILPDAYLVPRNTTARELAYMIHTELGEGFLYAVNARSKRRIGEDYVLENNDII
KIVAVKSRSS

Sequences:

>Translated_410_residues
MPPPEKIIGIVGKTNVGKSTLFSAITLLPVKIANHPFTTIEPNIGVGHVRVRCVHTEIGLPRCDPRAGFCISGERFIPVK
IIDVAGLIPGASMGRGLGNKFMDDLRQADVLIHVVDASGSTDLEGNPAAPGTHDPVEEAENILHEINEWFKNIVTRIWES
KISRFLASTQASLDLITQNLSGLSVRRQHVIEAIKKAGLEDKPFKNWSLTDVADFAVALREVSKPILIAANKIDTPVAVE
YVRALKKRFGEENVVPVSALGEYILRKASQGELIEYIPGDSMFRIKDSSRLTSDQLKVLKLIEDNVLKQYGSTGVQQLLN
HAVFRKLGLIVVYPVEDENKFTDHHGNILPDAYLVPRNTTARELAYMIHTELGEGFLYAVNARSKRRIGEDYVLENNDII
KIVAVKSRSS
>Mature_409_residues
PPPEKIIGIVGKTNVGKSTLFSAITLLPVKIANHPFTTIEPNIGVGHVRVRCVHTEIGLPRCDPRAGFCISGERFIPVKI
IDVAGLIPGASMGRGLGNKFMDDLRQADVLIHVVDASGSTDLEGNPAAPGTHDPVEEAENILHEINEWFKNIVTRIWESK
ISRFLASTQASLDLITQNLSGLSVRRQHVIEAIKKAGLEDKPFKNWSLTDVADFAVALREVSKPILIAANKIDTPVAVEY
VRALKKRFGEENVVPVSALGEYILRKASQGELIEYIPGDSMFRIKDSSRLTSDQLKVLKLIEDNVLKQYGSTGVQQLLNH
AVFRKLGLIVVYPVEDENKFTDHHGNILPDAYLVPRNTTARELAYMIHTELGEGFLYAVNARSKRRIGEDYVLENNDIIK
IVAVKSRSS

Specific function: Unknown

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=143, Percent_Identity=34.965034965035, Blast_Score=71, Evalue=2e-12,
Organism=Escherichia coli, GI1787454, Length=113, Percent_Identity=42.4778761061947, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1789574, Length=149, Percent_Identity=30.2013422818792, Blast_Score=70, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6321649, Length=411, Percent_Identity=35.2798053527981, Blast_Score=214, Evalue=1e-56,
Organism=Saccharomyces cerevisiae, GI6321773, Length=425, Percent_Identity=28.7058823529412, Blast_Score=83, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6319499, Length=141, Percent_Identity=36.1702127659575, Blast_Score=70, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24640873, Length=431, Percent_Identity=22.737819025522, Blast_Score=75, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24640877, Length=431, Percent_Identity=22.737819025522, Blast_Score=75, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24640875, Length=431, Percent_Identity=22.737819025522, Blast_Score=75, Evalue=8e-14,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR006073
- InterPro:   IPR013646
- InterPro:   IPR002917
- InterPro:   IPR004095
- InterPro:   IPR012676 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF08438 MMR_HSR1_C; PF02824 TGS [H]

EC number: NA

Molecular weight: Translated: 45323; Mature: 45192

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPPEKIIGIVGKTNVGKSTLFSAITLLPVKIANHPFTTIEPNIGVGHVRVRCVHTEIGL
CCCHHHHEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCEEEEEEEEEECCC
PRCDPRAGFCISGERFIPVKIIDVAGLIPGASMGRGLGNKFMDDLRQADVLIHVVDASGS
CCCCCCCCEEECCCCEEEEEEEEECCCCCCCHHCCCCCHHHHHHHHHCCEEEEEEECCCC
TDLEGNPAAPGTHDPVEEAENILHEINEWFKNIVTRIWESKISRFLASTQASLDLITQNL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SGLSVRRQHVIEAIKKAGLEDKPFKNWSLTDVADFAVALREVSKPILIAANKIDTPVAVE
CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH
YVRALKKRFGEENVVPVSALGEYILRKASQGELIEYIPGDSMFRIKDSSRLTSDQLKVLK
HHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCCEEEECCCCCEEEECCCCCCCHHHHHHHH
LIEDNVLKQYGSTGVQQLLNHAVFRKLGLIVVYPVEDENKFTDHHGNILPDAYLVPRNTT
HHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCEEECCCCH
ARELAYMIHTELGEGFLYAVNARSKRRIGEDYVLENNDIIKIVAVKSRSS
HHHHHHHHHHHCCCCEEEEECCCHHHCCCCCEEECCCCEEEEEEECCCCC
>Mature Secondary Structure 
PPPEKIIGIVGKTNVGKSTLFSAITLLPVKIANHPFTTIEPNIGVGHVRVRCVHTEIGL
CCHHHHEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCEEEEEEEEEECCC
PRCDPRAGFCISGERFIPVKIIDVAGLIPGASMGRGLGNKFMDDLRQADVLIHVVDASGS
CCCCCCCCEEECCCCEEEEEEEEECCCCCCCHHCCCCCHHHHHHHHHCCEEEEEEECCCC
TDLEGNPAAPGTHDPVEEAENILHEINEWFKNIVTRIWESKISRFLASTQASLDLITQNL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SGLSVRRQHVIEAIKKAGLEDKPFKNWSLTDVADFAVALREVSKPILIAANKIDTPVAVE
CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH
YVRALKKRFGEENVVPVSALGEYILRKASQGELIEYIPGDSMFRIKDSSRLTSDQLKVLK
HHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCCEEEECCCCCEEEECCCCCCCHHHHHHHH
LIEDNVLKQYGSTGVQQLLNHAVFRKLGLIVVYPVEDENKFTDHHGNILPDAYLVPRNTT
HHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCEEECCCCH
ARELAYMIHTELGEGFLYAVNARSKRRIGEDYVLENNDIIKIVAVKSRSS
HHHHHHHHHHHCCCCEEEEECCCHHHCCCCCEEECCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]