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The map label for this gene is 218884396

Identifier: 218884396

GI number: 218884396

Start: 1025229

End: 1026299

Strand: Direct

Name: 218884396

Synonym: DKAM_1085

Alternate gene names: NA

Gene position: 1025229-1026299 (Clockwise)

Preceding gene: 218884395

Following gene: 218884397

Centisome position: 75.1

GC content: 42.39

Gene sequence:

>1071_bases
TTGAGTAATACTCGTTTCTGCGTTAAATGCGGGAGGGAATTCAAACAGGAGGATTTAATCAACAGCTTATGCGTTAATTG
CTACCTAAAGTACCATGGAGTCTTCAAGGAAACCCCTCATGTAGAACTGACAATATGCCCTAAATGCGGTTCATGGTATT
TTAAGGGGGCATGGCATCCTTCCCTAGACATAAGGGAGGTTATAAGGAGGGAGCTACTGGCGGATCTCCATAGATTCCTA
TATGAGAATATAAGTGTAATCGAGGTTGACGTGGTTTCCGACATATACAAGATCAACGCTGGTGAATATGGTGTTAAAGC
GATATTCACCATGGAAGTCGATGGAAGACATGTTGTCAAGGTAAACCAGGTAGTAATTACAAAGCTTAGATATAGAACCT
GCGATAAATGCATGAGGAGAACAACCGGTTCACATAAAGTACTCGTACAGGTGAGGTTTGAACCACTAGAAAACATAGAG
GGGCTGCGACACGAGGTCATGGAGTTACTACGTGATCTTGAAATAGGTGAAAGTATCATCGAAGTAATGGAGCTACGGGA
GGGTTTAGACATAAAATTCGAAGATATAGTGTCCCCGAGGAAATATGTTAACATATTGGTAAAGAAATATGGGGCTAAGA
CCTCGGAGTCGTTTAAGTCGACGAAATACGATTTCCAAGAGGGTAAATGGAGCGGAGTGATGACTATATCGGTAAGGATA
CCCGTAATCAGAGAGAACGACATAGTGAGATACAGGGGTAAACTAGGTATTGTTAAACAAGTTGAAAACGGTGTCATTAG
AATCCTCATCCTGGAGACAGGGGAGGAAGTGGAAGCTCGTCTCTCAGAGTACTGGGACAGAGTGCTCGAAAAGCCCGGTG
GGATCTATATAGATGAACGAGTATTCACTGTAATAGCCATAGACAAGTCAACAATATATCTCCTAAACGAGGAAACAGGT
GAGTTGGGAGAGGCATCCTTAACCCCAGCTAATTATGGGTTAAAGCCGGGTGATAAAGTTATAATATTGAGTGATGGTGA
AAGAGAACTAGTAGTAAAAAAGGAGGGGTGA

Upstream 100 bases:

>100_bases
GGCTGCATTAGAGATGGGATTAATCCATCCTGAAGCAGTTTTAAGAATAAAGGGCATACCCATAGCTCTTTTCATGAGGA
TTTAATAGGGGTATAATGTT

Downstream 100 bases:

>100_bases
GGTGTCTGAGTAAGAAGCATCAAAAACAGGGAGATGAGCATGGTGGAGAGATACCACTACCCAACCCTGATGAGGGGACG
ATAATATGTGGTGTAGTAAG

Product: NMD protein affecting ribosome stability and mRNA decay-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MSNTRFCVKCGREFKQEDLINSLCVNCYLKYHGVFKETPHVELTICPKCGSWYFKGAWHPSLDIREVIRRELLADLHRFL
YENISVIEVDVVSDIYKINAGEYGVKAIFTMEVDGRHVVKVNQVVITKLRYRTCDKCMRRTTGSHKVLVQVRFEPLENIE
GLRHEVMELLRDLEIGESIIEVMELREGLDIKFEDIVSPRKYVNILVKKYGAKTSESFKSTKYDFQEGKWSGVMTISVRI
PVIRENDIVRYRGKLGIVKQVENGVIRILILETGEEVEARLSEYWDRVLEKPGGIYIDERVFTVIAIDKSTIYLLNEETG
ELGEASLTPANYGLKPGDKVIILSDGERELVVKKEG

Sequences:

>Translated_356_residues
MSNTRFCVKCGREFKQEDLINSLCVNCYLKYHGVFKETPHVELTICPKCGSWYFKGAWHPSLDIREVIRRELLADLHRFL
YENISVIEVDVVSDIYKINAGEYGVKAIFTMEVDGRHVVKVNQVVITKLRYRTCDKCMRRTTGSHKVLVQVRFEPLENIE
GLRHEVMELLRDLEIGESIIEVMELREGLDIKFEDIVSPRKYVNILVKKYGAKTSESFKSTKYDFQEGKWSGVMTISVRI
PVIRENDIVRYRGKLGIVKQVENGVIRILILETGEEVEARLSEYWDRVLEKPGGIYIDERVFTVIAIDKSTIYLLNEETG
ELGEASLTPANYGLKPGDKVIILSDGERELVVKKEG
>Mature_355_residues
SNTRFCVKCGREFKQEDLINSLCVNCYLKYHGVFKETPHVELTICPKCGSWYFKGAWHPSLDIREVIRRELLADLHRFLY
ENISVIEVDVVSDIYKINAGEYGVKAIFTMEVDGRHVVKVNQVVITKLRYRTCDKCMRRTTGSHKVLVQVRFEPLENIEG
LRHEVMELLRDLEIGESIIEVMELREGLDIKFEDIVSPRKYVNILVKKYGAKTSESFKSTKYDFQEGKWSGVMTISVRIP
VIRENDIVRYRGKLGIVKQVENGVIRILILETGEEVEARLSEYWDRVLEKPGGIYIDERVFTVIAIDKSTIYLLNEETGE
LGEASLTPANYGLKPGDKVIILSDGERELVVKKEG

Specific function: Unknown

COG id: COG1499

COG function: function code J; NMD protein affecting ribosome stability and mRNA decay

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007064 [H]

Pfam domain/function: PF04981 NMD3 [H]

EC number: NA

Molecular weight: Translated: 40976; Mature: 40845

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNTRFCVKCGREFKQEDLINSLCVNCYLKYHGVFKETPHVELTICPKCGSWYFKGAWHP
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHEECCEECCCCCEEEEECCCCCCCEECCCCCC
SLDIREVIRRELLADLHRFLYENISVIEVDVVSDIYKINAGEYGVKAIFTMEVDGRHVVK
CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHEECCCCCCEEEEEEEEECCCEEEE
VNQVVITKLRYRTCDKCMRRTTGSHKVLVQVRFEPLENIEGLRHEVMELLRDLEIGESII
EHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
EVMELREGLDIKFEDIVSPRKYVNILVKKYGAKTSESFKSTKYDFQEGKWSGVMTISVRI
HHHHHHCCCCEEHHHHCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCEEEEEEEEE
PVIRENDIVRYRGKLGIVKQVENGVIRILILETGEEVEARLSEYWDRVLEKPGGIYIDER
EEEECCCEEEEECCCCHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECE
VFTVIAIDKSTIYLLNEETGELGEASLTPANYGLKPGDKVIILSDGERELVVKKEG
EEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECC
>Mature Secondary Structure 
SNTRFCVKCGREFKQEDLINSLCVNCYLKYHGVFKETPHVELTICPKCGSWYFKGAWHP
CCCEEHHHHHHHHHHHHHHHHHHHHHHHEECCEECCCCCEEEEECCCCCCCEECCCCCC
SLDIREVIRRELLADLHRFLYENISVIEVDVVSDIYKINAGEYGVKAIFTMEVDGRHVVK
CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHEECCCCCCEEEEEEEEECCCEEEE
VNQVVITKLRYRTCDKCMRRTTGSHKVLVQVRFEPLENIEGLRHEVMELLRDLEIGESII
EHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
EVMELREGLDIKFEDIVSPRKYVNILVKKYGAKTSESFKSTKYDFQEGKWSGVMTISVRI
HHHHHHCCCCEEHHHHCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCEEEEEEEEE
PVIRENDIVRYRGKLGIVKQVENGVIRILILETGEEVEARLSEYWDRVLEKPGGIYIDER
EEEECCCEEEEECCCCHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECE
VFTVIAIDKSTIYLLNEETGELGEASLTPANYGLKPGDKVIILSDGERELVVKKEG
EEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]