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The map label for this gene is atpD [H]

Identifier: 218884300

GI number: 218884300

Start: 936843

End: 937457

Strand: Direct

Name: atpD [H]

Synonym: DKAM_0989

Alternate gene names: 218884300

Gene position: 936843-937457 (Clockwise)

Preceding gene: 218884299

Following gene: 218884301

Centisome position: 68.62

GC content: 45.53

Gene sequence:

>615_bases
ATGTCAAGCCTCCAGAGAGTGCGTCCCACCAAGATCGAGTTGATAAGGCTTAAGAGAAGGCTCGAGATAAGTGTGAAGGT
TGAGAGGATACTGCGTGAGAGACTCATCATTTTAACTAATGAGTTCCTAGCCCTCCTTAAAGAGGGAGTGTCCAAGAGGC
AGAGCGTGAGCACCCTACTTATTAACTTGAACTCTAGGGCTGTCATGCTTTCAGGGGTCTACGGCGAGAACATATATAGC
CTGCTGGAGAAAACAGTGCCGAAAAATAACTGTGTAGTAGGCACTGAAAACATCATGGGGGTTAAAACCAAGACAGCCAT
ACTGGTGAAGAATACTGAGAAGAAGACCGTAAAGACTCCCTTCGATGACTTCATAGAGGAGTCAACCAGATTCATAGAGG
AAGTCCTAGACCTCGCGAAAACAGAGTATGCTTTAAGGGCTCTCGGTAAGGAGATACGGGCAACCAAGCGAAGGGTAAAC
GCATTAGATTACATCTTAATACCCAGGCTCAAGTCCACTATAAAGATACTCCAGTTAAAGTTCGATGAAAGGGAGAGGGA
AGAAAAGGCAAGATTGAAGAGGGTTAAAGCTAGCCTTGAGAGGAGGGAGAAATGA

Upstream 100 bases:

>100_bases
ACGTGTTATACAGGCTTATAAAAGGAGAGAACACATTTGAGTTTTACCTGTATAAAATAGTGGAGAAATCGGATTAGCCA
GTAGACATGGTGCTTAAGCC

Downstream 100 bases:

>100_bases
GCAATAACTATATTGAGAGATTTCTGAGTGAAGAGTTGAGGCTGGTTAATAAGCATGCCCCATATGAGAGAAAGAATTTA
TGCGAGCTCCTCAAGATGGA

Product: V-type ATPase subunit D

Products: ADP; phosphate; H+

Alternate protein names: V-ATPase subunit D [H]

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MSSLQRVRPTKIELIRLKRRLEISVKVERILRERLIILTNEFLALLKEGVSKRQSVSTLLINLNSRAVMLSGVYGENIYS
LLEKTVPKNNCVVGTENIMGVKTKTAILVKNTEKKTVKTPFDDFIEESTRFIEEVLDLAKTEYALRALGKEIRATKRRVN
ALDYILIPRLKSTIKILQLKFDEREREEKARLKRVKASLERREK

Sequences:

>Translated_204_residues
MSSLQRVRPTKIELIRLKRRLEISVKVERILRERLIILTNEFLALLKEGVSKRQSVSTLLINLNSRAVMLSGVYGENIYS
LLEKTVPKNNCVVGTENIMGVKTKTAILVKNTEKKTVKTPFDDFIEESTRFIEEVLDLAKTEYALRALGKEIRATKRRVN
ALDYILIPRLKSTIKILQLKFDEREREEKARLKRVKASLERREK
>Mature_203_residues
SSLQRVRPTKIELIRLKRRLEISVKVERILRERLIILTNEFLALLKEGVSKRQSVSTLLINLNSRAVMLSGVYGENIYSL
LEKTVPKNNCVVGTENIMGVKTKTAILVKNTEKKTVKTPFDDFIEESTRFIEEVLDLAKTEYALRALGKEIRATKRRVNA
LDYILIPRLKSTIKILQLKFDEREREEKARLKRVKASLERREK

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane [H]

COG id: COG1394

COG function: function code C; Archaeal/vacuolar-type H+-ATPase subunit D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the V-ATPase D subunit family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002699 [H]

Pfam domain/function: PF01813 ATP-synt_D [H]

EC number: 3.6.3.14

Molecular weight: Translated: 23695; Mature: 23564

Theoretical pI: Translated: 10.85; Mature: 10.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLQRVRPTKIELIRLKRRLEISVKVERILRERLIILTNEFLALLKEGVSKRQSVSTLL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
INLNSRAVMLSGVYGENIYSLLEKTVPKNNCVVGTENIMGVKTKTAILVKNTEKKTVKTP
EECCCCEEEEECCHHHHHHHHHHHHCCCCCCEEECCCCCCCEEHEEEEEECCCCCCCCCC
FDDFIEESTRFIEEVLDLAKTEYALRALGKEIRATKRRVNALDYILIPRLKSTIKILQLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FDEREREEKARLKRVKASLERREK
CCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSLQRVRPTKIELIRLKRRLEISVKVERILRERLIILTNEFLALLKEGVSKRQSVSTLL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
INLNSRAVMLSGVYGENIYSLLEKTVPKNNCVVGTENIMGVKTKTAILVKNTEKKTVKTP
EECCCCEEEEECCHHHHHHHHHHHHCCCCCCEEECCCCCCCEEHEEEEEECCCCCCCCCC
FDDFIEESTRFIEEVLDLAKTEYALRALGKEIRATKRRVNALDYILIPRLKSTIKILQLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FDEREREEKARLKRVKASLERREK
CCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA