Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
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Accession | NC_011766 |
Length | 1,365,223 |
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The map label for this gene is 218884301
Identifier: 218884301
GI number: 218884301
Start: 937454
End: 937876
Strand: Direct
Name: 218884301
Synonym: DKAM_0990
Alternate gene names: NA
Gene position: 937454-937876 (Clockwise)
Preceding gene: 218884300
Following gene: 218884302
Centisome position: 68.67
GC content: 41.13
Gene sequence:
>423_bases ATGAGCAATAACTATATTGAGAGATTTCTGAGTGAAGAGTTGAGGCTGGTTAATAAGCATGCCCCATATGAGAGAAAGAA TTTATGCGAGCTCCTCAAGATGGAGATACCATACATAGTTCTTAGGGATGGAAGCCAACATGTATTGGATCCCCGTGAAT TAAGAAGGCTACGCGATATCCTAGCTGATGACGCATGCAGTCTTCAACTACCTATAGTAATAGAGTATATACCCGGAGAA AGGGAAGGTATATATGTCGTAAGGGATGAAATAGGGGCTAAAGCAATTGCTTCAGTAATGAATATAGGGAATCCTACTAC TCCACTATTCCTCAGCCGCGCGCATATTTTAGAGCTAAGACGGATATTAAGAACCACCACAACAATACTCTTAAACCCCG GCACATCAATTAACCTTGTTTAG
Upstream 100 bases:
>100_bases AGTCCACTATAAAGATACTCCAGTTAAAGTTCGATGAAAGGGAGAGGGAAGAAAAGGCAAGATTGAAGAGGGTTAAAGCT AGCCTTGAGAGGAGGGAGAA
Downstream 100 bases:
>100_bases GGTGTTCAAGGATGTCATCTATTAAGGATGTTGATGAGTCAATAGATGCGATCATTAAGGAGGCTGAGAAAAAGAAGTTA ATGATACTGAAGGAGGCTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 140; Mature: 139
Protein sequence:
>140_residues MSNNYIERFLSEELRLVNKHAPYERKNLCELLKMEIPYIVLRDGSQHVLDPRELRRLRDILADDACSLQLPIVIEYIPGE REGIYVVRDEIGAKAIASVMNIGNPTTPLFLSRAHILELRRILRTTTTILLNPGTSINLV
Sequences:
>Translated_140_residues MSNNYIERFLSEELRLVNKHAPYERKNLCELLKMEIPYIVLRDGSQHVLDPRELRRLRDILADDACSLQLPIVIEYIPGE REGIYVVRDEIGAKAIASVMNIGNPTTPLFLSRAHILELRRILRTTTTILLNPGTSINLV >Mature_139_residues SNNYIERFLSEELRLVNKHAPYERKNLCELLKMEIPYIVLRDGSQHVLDPRELRRLRDILADDACSLQLPIVIEYIPGER EGIYVVRDEIGAKAIASVMNIGNPTTPLFLSRAHILELRRILRTTTTILLNPGTSINLV
Specific function: Unknown
COG id: COG2083
COG function: function code S; Uncharacterized protein conserved in archaea
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0216 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002746 - ProDom: PD016056 [H]
Pfam domain/function: PF01886 DUF61 [H]
EC number: NA
Molecular weight: Translated: 16049; Mature: 15918
Theoretical pI: Translated: 7.51; Mature: 7.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNNYIERFLSEELRLVNKHAPYERKNLCELLKMEIPYIVLRDGSQHVLDPRELRRLRDI CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHH LADDACSLQLPIVIEYIPGEREGIYVVRDEIGAKAIASVMNIGNPTTPLFLSRAHILELR HCCCCCCEECCEEEEECCCCCCCEEEEHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHHH RILRTTTTILLNPGTSINLV HHHHHHHEEEECCCCEEECC >Mature Secondary Structure SNNYIERFLSEELRLVNKHAPYERKNLCELLKMEIPYIVLRDGSQHVLDPRELRRLRDI CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHH LADDACSLQLPIVIEYIPGEREGIYVVRDEIGAKAIASVMNIGNPTTPLFLSRAHILELR HCCCCCCEECCEEEEECCCCCCCEEEEHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHHH RILRTTTTILLNPGTSINLV HHHHHHHEEEECCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA