Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
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Accession | NC_011766 |
Length | 1,365,223 |
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The map label for this gene is 218884291
Identifier: 218884291
GI number: 218884291
Start: 929665
End: 930906
Strand: Direct
Name: 218884291
Synonym: DKAM_0980
Alternate gene names: NA
Gene position: 929665-930906 (Clockwise)
Preceding gene: 218884289
Following gene: 218884298
Centisome position: 68.1
GC content: 43.72
Gene sequence:
>1242_bases ATGTCCATGATTAATGGGTTCAAGGATCTACTAGGTGTCCTAAGAGGAAACGTGCTAGTAATGGCTATCTCATGGTTTCT CTATGGTTTAAGCGGCGCGCTTGTCCAGCCCTTCTTCTCTCTTTACGCTAAGAGTCTTGGAGCAGGGGATTTCGAGATAG CCCTTGTCAAATCCACCGGTATGGTTGCACTGGGTTTATTCACTATCCTGGGAGGGGTGTTAACCGATAGGGTTGGAAGG GTTAGAATTATTCTGGCTGGAACATTGTTTGTCTCGCTTGTTCAATTCGCATATGCTTTTGCACAGTCATGGAATCAATT GGCGATTATATGGGTGATAGATGAAGCCATCCATTTCTACCAACCGGCTTTAACGGCTATAGTAATGGATTCCCTTCCAT CCAGGAAGGAGTTGAAGGGCTTCATTGCGTTGAACGTCTTCCCTAATATTCCATGGCTCTTCATGCCTGTAGTCGGCGGG AAACTATATGATGTATATGGTGTTCAAGGAATTAGATACGGCTTTATACTATCCGGGACTTTGAGTCTAATAGTCTTGTT CCTCAGAGCTAGGAGTCTCAGGGAAACCATTAATCTGAGGAATAATAGAGGCGACTTCAACATAATTAATGATATAGCCG AGTTATTCAGGTACAGGACGGTTAAATACGTTGTCCTAATCTACTTGTTCACCGGGTTCATCTCGCCTTTGGCATCCTCT GTTTGGAATACATATGGATCAATATACTCTGTTAGAATACTGGAAGTTACTAATACTGAATGGGGGTTCATCAACACTGT GGGAACAGCATCCTCTATAGCTGCATCAATAATCCTGGCCTCATTACTCAGCGAGAACTATTTAACTGTGATCCTCTTGG CTGGTTCATTGTCAACTATATCATACCTATTATACGCTACACCACTACTCATCAGTACAAATCCATTACTTCCCCTGGTT ATAGGCACGATCTTCGGAGCTATTGGGGGAGCGTTAGTGGGACCATTGATCTCCGCTATACTAACCAAGATACTCCCGAT GGAGATACGTGGCAGGGCCACAGGTGTTCAAAGATTCCTGGAGAACATGGGTGCAGCGCTTGCAAACTATATTGGTGGAC TACTATATGTGGGCCTGGGGCCGCTTAAAAGCATACTAGCTTCATGCATTCTAAGCATGATCGCATTCATGTATATATAC CTGTTATTCACGCTGGCTTTAAAGGAATACATACACTCATAA
Upstream 100 bases:
>100_bases CATTTATTATTCTGTTGGCCTACCAGCATATGTCAAGTTAAAAATATGTATTTTTTAAAACCTTGGGGAATCAATTGAGT ATCATTATGGGTGCTTATTG
Downstream 100 bases:
>100_bases TCAGTAAAGAACTCAGTACTCAAGACCATCCTCATTGCTATGCTCAGTCTTCCCGAGTTCATCACTGGGGTTTCTGCTCC TCCACATAGTATGTACATAT
Product: major facilitator superfamily protein
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Transporter Facilitator Family; Transport Authentic Frameshift; Facilitator Superfamily Permease
Number of amino acids: Translated: 413; Mature: 412
Protein sequence:
>413_residues MSMINGFKDLLGVLRGNVLVMAISWFLYGLSGALVQPFFSLYAKSLGAGDFEIALVKSTGMVALGLFTILGGVLTDRVGR VRIILAGTLFVSLVQFAYAFAQSWNQLAIIWVIDEAIHFYQPALTAIVMDSLPSRKELKGFIALNVFPNIPWLFMPVVGG KLYDVYGVQGIRYGFILSGTLSLIVLFLRARSLRETINLRNNRGDFNIINDIAELFRYRTVKYVVLIYLFTGFISPLASS VWNTYGSIYSVRILEVTNTEWGFINTVGTASSIAASIILASLLSENYLTVILLAGSLSTISYLLYATPLLISTNPLLPLV IGTIFGAIGGALVGPLISAILTKILPMEIRGRATGVQRFLENMGAALANYIGGLLYVGLGPLKSILASCILSMIAFMYIY LLFTLALKEYIHS
Sequences:
>Translated_413_residues MSMINGFKDLLGVLRGNVLVMAISWFLYGLSGALVQPFFSLYAKSLGAGDFEIALVKSTGMVALGLFTILGGVLTDRVGR VRIILAGTLFVSLVQFAYAFAQSWNQLAIIWVIDEAIHFYQPALTAIVMDSLPSRKELKGFIALNVFPNIPWLFMPVVGG KLYDVYGVQGIRYGFILSGTLSLIVLFLRARSLRETINLRNNRGDFNIINDIAELFRYRTVKYVVLIYLFTGFISPLASS VWNTYGSIYSVRILEVTNTEWGFINTVGTASSIAASIILASLLSENYLTVILLAGSLSTISYLLYATPLLISTNPLLPLV IGTIFGAIGGALVGPLISAILTKILPMEIRGRATGVQRFLENMGAALANYIGGLLYVGLGPLKSILASCILSMIAFMYIY LLFTLALKEYIHS >Mature_412_residues SMINGFKDLLGVLRGNVLVMAISWFLYGLSGALVQPFFSLYAKSLGAGDFEIALVKSTGMVALGLFTILGGVLTDRVGRV RIILAGTLFVSLVQFAYAFAQSWNQLAIIWVIDEAIHFYQPALTAIVMDSLPSRKELKGFIALNVFPNIPWLFMPVVGGK LYDVYGVQGIRYGFILSGTLSLIVLFLRARSLRETINLRNNRGDFNIINDIAELFRYRTVKYVVLIYLFTGFISPLASSV WNTYGSIYSVRILEVTNTEWGFINTVGTASSIAASIILASLLSENYLTVILLAGSLSTISYLLYATPLLISTNPLLPLVI GTIFGAIGGALVGPLISAILTKILPMEIRGRATGVQRFLENMGAALANYIGGLLYVGLGPLKSILASCILSMIAFMYIYL LFTLALKEYIHS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45114; Mature: 44983
Theoretical pI: Translated: 9.67; Mature: 9.67
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMINGFKDLLGVLRGNVLVMAISWFLYGLSGALVQPFFSLYAKSLGAGDFEIALVKSTG CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC MVALGLFTILGGVLTDRVGRVRIILAGTLFVSLVQFAYAFAQSWNQLAIIWVIDEAIHFY HHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHH QPALTAIVMDSLPSRKELKGFIALNVFPNIPWLFMPVVGGKLYDVYGVQGIRYGFILSGT HHHHHHHHHHCCCCHHHHCCEEEEEECCCCCCHHHHHCCCCHHHHHCCCHHHHHHHHHHH LSLIVLFLRARSLRETINLRNNRGDFNIINDIAELFRYRTVKYVVLIYLFTGFISPLASS HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VWNTYGSIYSVRILEVTNTEWGFINTVGTASSIAASIILASLLSENYLTVILLAGSLSTI HHHHHCCEEEEEEEEEECCCCCCEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHH SYLLYATPLLISTNPLLPLVIGTIFGAIGGALVGPLISAILTKILPMEIRGRATGVQRFL HHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHH ENMGAALANYIGGLLYVGLGPLKSILASCILSMIAFMYIYLLFTLALKEYIHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SMINGFKDLLGVLRGNVLVMAISWFLYGLSGALVQPFFSLYAKSLGAGDFEIALVKSTG CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC MVALGLFTILGGVLTDRVGRVRIILAGTLFVSLVQFAYAFAQSWNQLAIIWVIDEAIHFY HHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHH QPALTAIVMDSLPSRKELKGFIALNVFPNIPWLFMPVVGGKLYDVYGVQGIRYGFILSGT HHHHHHHHHHCCCCHHHHCCEEEEEECCCCCCHHHHHCCCCHHHHHCCCHHHHHHHHHHH LSLIVLFLRARSLRETINLRNNRGDFNIINDIAELFRYRTVKYVVLIYLFTGFISPLASS HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VWNTYGSIYSVRILEVTNTEWGFINTVGTASSIAASIILASLLSENYLTVILLAGSLSTI HHHHHCCEEEEEEEEEECCCCCCEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHH SYLLYATPLLISTNPLLPLVIGTIFGAIGGALVGPLISAILTKILPMEIRGRATGVQRFL HHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHH ENMGAALANYIGGLLYVGLGPLKSILASCILSMIAFMYIYLLFTLALKEYIHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA