| Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
|---|---|
| Accession | NC_011766 |
| Length | 1,365,223 |
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The map label for this gene is 218884183
Identifier: 218884183
GI number: 218884183
Start: 836278
End: 837330
Strand: Reverse
Name: 218884183
Synonym: DKAM_0872
Alternate gene names: NA
Gene position: 837330-836278 (Counterclockwise)
Preceding gene: 218884184
Following gene: 218884182
Centisome position: 61.33
GC content: 48.43
Gene sequence:
>1053_bases ATGGGGAAGCCTATTTATTTAGCATGGAGAATTAATTATTCCGGGTGCATCCACTTGAACCCGCCTCTAGTAGATCTCCA CGAGGATATAGCGGCCTATGTTCTCTCAGGAAGCCTGCTCAACCCATTCCCATTGAAACCCTTTGATATCGATGAACCAC TCCGGCACGCTGATATCCCGAAGTACCTCGCCAGCAACACAAGGCTCGTTGTCGCCAGTATCTTCCCCATGATACCCTGG TACTCCCGTGGTGGGAGGATATCTTACAAGCATTATCCGAGCCTTGAGCTGGTTTACGCAGGGTTGGACTTATACAGGAA TATTGTGTTAGCCCACAGAGAGTTCAAGCTTGTATTAGGTAGAGACCAGCTTCAGGGACTCTTCAATGAGAAAAATGGTA GCATAGGCTTGCTTGTAGGGCTTGAAGGGGCTGATTCCTTGAGGAGCCCAGAGGACCTGGATCTCTTATATGCTGGCGGG CTACGTGTATTAGGGTTAACCTGGAACTATAACAATAAGTACGCTTCCTCCTGTAGGACACAGATCGATAATGGCTTGAC GAGGGAGGGTTTAGAGCTCATTGGGAGAGCCGTGGAGCTAGGGGTAGCAGTGGATCTAGCCCATGCAAGCGGGAAAACAG TGAGAGACACATACGAGGCAACAGGGAAGCCCGTAATAGTCAGTCACGCCAATACCAGATCGGTTCATAACCATCCTAGG AACCTTGATGACAAGACGCTGGAAGTAGTGGCAGAGAGCAAGGGGGTTGTAGGACTAGTATTCATAGCTTCATTCGTGTC AACGGGTGTACCAGATGTATCCAGCCTGGTCAGACACGCGGTATATATAAGAGATAATTATGGAGTGGACATATTAGCAA TAGGCTCAGACTACTTCGGCTCACTTGATGCACCGCTTGTTAAAGGACTGGAATCCATCGATAAAATAGGGAGCTTATGG AGCAAGCTACTCGAGGAAGGCTTCACTAGAGAAGACATCGAGAAAATAGCCTGGAGAAACCCGCTCAGAGCACTTACAGC ATGGCTGAAATAA
Upstream 100 bases:
>100_bases TAGTCATCATACCTTAAACGCTTAACATTGATACTGGATGTCACCAGGTATAACTACACGCAGGCGGAGTCTACTCTATC CTTGAGTAACCTACGCGTCA
Downstream 100 bases:
>100_bases CTCATAATCCAACCCTACTCCAGTCCACGTAGGCCTTATAGCTAGGTTTTTATAGTTGTACATAGAGATATATCTTGGGG AGGGTTATCCATGGTTAAAT
Product: peptidase
Products: NA
Alternate protein names: ORF X [H]
Number of amino acids: Translated: 350; Mature: 349
Protein sequence:
>350_residues MGKPIYLAWRINYSGCIHLNPPLVDLHEDIAAYVLSGSLLNPFPLKPFDIDEPLRHADIPKYLASNTRLVVASIFPMIPW YSRGGRISYKHYPSLELVYAGLDLYRNIVLAHREFKLVLGRDQLQGLFNEKNGSIGLLVGLEGADSLRSPEDLDLLYAGG LRVLGLTWNYNNKYASSCRTQIDNGLTREGLELIGRAVELGVAVDLAHASGKTVRDTYEATGKPVIVSHANTRSVHNHPR NLDDKTLEVVAESKGVVGLVFIASFVSTGVPDVSSLVRHAVYIRDNYGVDILAIGSDYFGSLDAPLVKGLESIDKIGSLW SKLLEEGFTREDIEKIAWRNPLRALTAWLK
Sequences:
>Translated_350_residues MGKPIYLAWRINYSGCIHLNPPLVDLHEDIAAYVLSGSLLNPFPLKPFDIDEPLRHADIPKYLASNTRLVVASIFPMIPW YSRGGRISYKHYPSLELVYAGLDLYRNIVLAHREFKLVLGRDQLQGLFNEKNGSIGLLVGLEGADSLRSPEDLDLLYAGG LRVLGLTWNYNNKYASSCRTQIDNGLTREGLELIGRAVELGVAVDLAHASGKTVRDTYEATGKPVIVSHANTRSVHNHPR NLDDKTLEVVAESKGVVGLVFIASFVSTGVPDVSSLVRHAVYIRDNYGVDILAIGSDYFGSLDAPLVKGLESIDKIGSLW SKLLEEGFTREDIEKIAWRNPLRALTAWLK >Mature_349_residues GKPIYLAWRINYSGCIHLNPPLVDLHEDIAAYVLSGSLLNPFPLKPFDIDEPLRHADIPKYLASNTRLVVASIFPMIPWY SRGGRISYKHYPSLELVYAGLDLYRNIVLAHREFKLVLGRDQLQGLFNEKNGSIGLLVGLEGADSLRSPEDLDLLYAGGL RVLGLTWNYNNKYASSCRTQIDNGLTREGLELIGRAVELGVAVDLAHASGKTVRDTYEATGKPVIVSHANTRSVHNHPRN LDDKTLEVVAESKGVVGLVFIASFVSTGVPDVSSLVRHAVYIRDNYGVDILAIGSDYFGSLDAPLVKGLESIDKIGSLWS KLLEEGFTREDIEKIAWRNPLRALTAWLK
Specific function: Unknown
COG id: COG2355
COG function: function code E; Zn-dependent dipeptidase, microsomal dipeptidase homolog
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M19 family [H]
Homologues:
Organism=Homo sapiens, GI11641269, Length=261, Percent_Identity=30.2681992337165, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI189458885, Length=225, Percent_Identity=30.2222222222222, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI4758190, Length=225, Percent_Identity=30.2222222222222, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI193211608, Length=261, Percent_Identity=26.4367816091954, Blast_Score=86, Evalue=7e-17, Organism=Homo sapiens, GI193211610, Length=260, Percent_Identity=26.1538461538462, Blast_Score=82, Evalue=8e-16, Organism=Drosophila melanogaster, GI281362638, Length=276, Percent_Identity=31.1594202898551, Blast_Score=113, Evalue=2e-25, Organism=Drosophila melanogaster, GI281362636, Length=276, Percent_Identity=31.1594202898551, Blast_Score=113, Evalue=2e-25, Organism=Drosophila melanogaster, GI161083233, Length=218, Percent_Identity=33.0275229357798, Blast_Score=104, Evalue=1e-22, Organism=Drosophila melanogaster, GI221475880, Length=344, Percent_Identity=29.0697674418605, Blast_Score=98, Evalue=8e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008257 [H]
Pfam domain/function: PF01244 Peptidase_M19 [H]
EC number: NA
Molecular weight: Translated: 38735; Mature: 38604
Theoretical pI: Translated: 6.86; Mature: 6.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKPIYLAWRINYSGCIHLNPPLVDLHEDIAAYVLSGSLLNPFPLKPFDIDEPLRHADIP CCCCEEEEEEECCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCH KYLASNTRLVVASIFPMIPWYSRGGRISYKHYPSLELVYAGLDLYRNIVLAHREFKLVLG HHHHCCCEEEEEEHHHCCCCCCCCCEEEEEECCCCEEEEHHHHHHHHHHHHHHHEEEEEC RDQLQGLFNEKNGSIGLLVGLEGADSLRSPEDLDLLYAGGLRVLGLTWNYNNKYASSCRT CHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCEEEEEEEECCCCHHHHHHHH QIDNGLTREGLELIGRAVELGVAVDLAHASGKTVRDTYEATGKPVIVSHANTRSVHNHPR HHHCCCCHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCC NLDDKTLEVVAESKGVVGLVFIASFVSTGVPDVSSLVRHAVYIRDNYGVDILAIGSDYFG CCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHEEEEECCCCEEEEEECCCCCC SLDAPLVKGLESIDKIGSLWSKLLEEGFTREDIEKIAWRNPLRALTAWLK CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCC >Mature Secondary Structure GKPIYLAWRINYSGCIHLNPPLVDLHEDIAAYVLSGSLLNPFPLKPFDIDEPLRHADIP CCCEEEEEEECCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCH KYLASNTRLVVASIFPMIPWYSRGGRISYKHYPSLELVYAGLDLYRNIVLAHREFKLVLG HHHHCCCEEEEEEHHHCCCCCCCCCEEEEEECCCCEEEEHHHHHHHHHHHHHHHEEEEEC RDQLQGLFNEKNGSIGLLVGLEGADSLRSPEDLDLLYAGGLRVLGLTWNYNNKYASSCRT CHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCEEEEEEEECCCCHHHHHHHH QIDNGLTREGLELIGRAVELGVAVDLAHASGKTVRDTYEATGKPVIVSHANTRSVHNHPR HHHCCCCHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCC NLDDKTLEVVAESKGVVGLVFIASFVSTGVPDVSSLVRHAVYIRDNYGVDILAIGSDYFG CCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHEEEEECCCCEEEEEECCCCCC SLDAPLVKGLESIDKIGSLWSKLLEEGFTREDIEKIAWRNPLRALTAWLK CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1313537 [H]