| Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
|---|---|
| Accession | NC_011766 |
| Length | 1,365,223 |
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The map label for this gene is 218884136
Identifier: 218884136
GI number: 218884136
Start: 792879
End: 793784
Strand: Reverse
Name: 218884136
Synonym: DKAM_0825
Alternate gene names: NA
Gene position: 793784-792879 (Counterclockwise)
Preceding gene: 218884137
Following gene: 218884135
Centisome position: 58.14
GC content: 40.51
Gene sequence:
>906_bases ATGCGCCTCAACGACGTGATCCAGTTGAGCATCGAGGGGTTTAAACTAGTTGAACTATATAAAAGTATCTCCGGCCCAAG GCTCGGGATAGCACATATACCAATACTGTTCAACGCCTTCGGGATAAATCTCAACAATATACGTAAAATAGTTTTTTATG CTAGTGAGAGAAACATACATACACTTATCATACCATACTCAGCTGCATTCGGACCCGTTATCGAGTTATACTCGAAAAAC ATGAGGGCCGAGGAGTTTCGCAGGAGATATGGTATAGATGAGGAGCATCCATATCTTAGAACACTTAAATATCTCTCAGC TAACTACGGGTTGAATATTATTTCCCCCGCAATAATGGAGCGCTCGGGGAGTAAATACTATGTTTCCACGGTATTTATAT CCTTCGAGGACGTGGAGGAGCATTCATCCCAGAGAAAAATACTTGTATCAAGCGATGAGGAGAAGATAGGTGTTAACCCT GGACGTGAAATAATAGTCTTCGATGACCATTACCTGAAGTACATGGCTCTTATATCGCGGGAAATCCTAGTACCAGAGTT CGGTAGAATAGGATCTATGAGGGGCTGTAATACATTAGTGGCTACTATATCACCATTAAAACCAGTTGAAAACTATGTCG ACATCGTGAAAACACTAGCACAAATGCTGGATAGATGGGTTATTCATGTAGGCGGAATATTCGTTGTTGAAGACAATAAG TATGTGTTAAACTCCATGATAGTGGATCCCGAGGGAAGGCTGGTTACAATATATAGTGATTCTGTCCCAGCATTAATATC GATACCCTATAAGGAGATGACAAGTAGAATACATGAGGCAAACAAGGAGGAAACAATAGGTATCCTTAAATTTGTGTCAG GACAATTAAGAAGACTGGAAAAATAA
Upstream 100 bases:
>100_bases ATTACCAGGAGGTATTAGAAGAGATCTATAGAGAGGTAAAGAATATAGTACTTGAAAACAAGGACATCAATGATTCATTG GAGAAAGAATATAATGAAAG
Downstream 100 bases:
>100_bases AGGAATATCCGGGATAATATCGGGGAAAACTGGTGTAGGTGTCCACTTTGGAGGAAGTAGAGAAGGCTGTCCCAATTAAG GTTGCCTCATTAAACGACCT
Product: amidohydrolase-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 301; Mature: 301
Protein sequence:
>301_residues MRLNDVIQLSIEGFKLVELYKSISGPRLGIAHIPILFNAFGINLNNIRKIVFYASERNIHTLIIPYSAAFGPVIELYSKN MRAEEFRRRYGIDEEHPYLRTLKYLSANYGLNIISPAIMERSGSKYYVSTVFISFEDVEEHSSQRKILVSSDEEKIGVNP GREIIVFDDHYLKYMALISREILVPEFGRIGSMRGCNTLVATISPLKPVENYVDIVKTLAQMLDRWVIHVGGIFVVEDNK YVLNSMIVDPEGRLVTIYSDSVPALISIPYKEMTSRIHEANKEETIGILKFVSGQLRRLEK
Sequences:
>Translated_301_residues MRLNDVIQLSIEGFKLVELYKSISGPRLGIAHIPILFNAFGINLNNIRKIVFYASERNIHTLIIPYSAAFGPVIELYSKN MRAEEFRRRYGIDEEHPYLRTLKYLSANYGLNIISPAIMERSGSKYYVSTVFISFEDVEEHSSQRKILVSSDEEKIGVNP GREIIVFDDHYLKYMALISREILVPEFGRIGSMRGCNTLVATISPLKPVENYVDIVKTLAQMLDRWVIHVGGIFVVEDNK YVLNSMIVDPEGRLVTIYSDSVPALISIPYKEMTSRIHEANKEETIGILKFVSGQLRRLEK >Mature_301_residues MRLNDVIQLSIEGFKLVELYKSISGPRLGIAHIPILFNAFGINLNNIRKIVFYASERNIHTLIIPYSAAFGPVIELYSKN MRAEEFRRRYGIDEEHPYLRTLKYLSANYGLNIISPAIMERSGSKYYVSTVFISFEDVEEHSSQRKILVSSDEEKIGVNP GREIIVFDDHYLKYMALISREILVPEFGRIGSMRGCNTLVATISPLKPVENYVDIVKTLAQMLDRWVIHVGGIFVVEDNK YVLNSMIVDPEGRLVTIYSDSVPALISIPYKEMTSRIHEANKEETIGILKFVSGQLRRLEK
Specific function: Unknown
COG id: COG0388
COG function: function code R; Predicted amidohydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34395; Mature: 34395
Theoretical pI: Translated: 7.76; Mature: 7.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLNDVIQLSIEGFKLVELYKSISGPRLGIAHIPILFNAFGINLNNIRKIVFYASERNIH CCCCCEEEEEECCCHHHHHHHHCCCCCEEHEEHHHHHHHHCCCHHHEEEEEEEECCCCEE TLIIPYSAAFGPVIELYSKNMRAEEFRRRYGIDEEHPYLRTLKYLSANYGLNIISPAIME EEEEECCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHCHHHHH RSGSKYYVSTVFISFEDVEEHSSQRKILVSSDEEKIGVNPGREIIVFDDHYLKYMALISR CCCCEEEEEEEEEEEHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHH EILVPEFGRIGSMRGCNTLVATISPLKPVENYVDIVKTLAQMLDRWVIHVGGIFVVEDNK HHCCCCCCCCCCCCCCHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCC YVLNSMIVDPEGRLVTIYSDSVPALISIPYKEMTSRIHEANKEETIGILKFVSGQLRRLE EEEEEEEECCCCCEEEEECCCCCEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC K C >Mature Secondary Structure MRLNDVIQLSIEGFKLVELYKSISGPRLGIAHIPILFNAFGINLNNIRKIVFYASERNIH CCCCCEEEEEECCCHHHHHHHHCCCCCEEHEEHHHHHHHHCCCHHHEEEEEEEECCCCEE TLIIPYSAAFGPVIELYSKNMRAEEFRRRYGIDEEHPYLRTLKYLSANYGLNIISPAIME EEEEECCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHCHHHHH RSGSKYYVSTVFISFEDVEEHSSQRKILVSSDEEKIGVNPGREIIVFDDHYLKYMALISR CCCCEEEEEEEEEEEHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHH EILVPEFGRIGSMRGCNTLVATISPLKPVENYVDIVKTLAQMLDRWVIHVGGIFVVEDNK HHCCCCCCCCCCCCCCHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCC YVLNSMIVDPEGRLVTIYSDSVPALISIPYKEMTSRIHEANKEETIGILKFVSGQLRRLE EEEEEEEECCCCCEEEEECCCCCEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC K C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA