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The map label for this gene is hypD [C]

Identifier: 218883960

GI number: 218883960

Start: 624180

End: 625307

Strand: Direct

Name: hypD [C]

Synonym: DKAM_0649

Alternate gene names: 218883960

Gene position: 624180-625307 (Clockwise)

Preceding gene: 218883959

Following gene: 218883961

Centisome position: 45.72

GC content: 44.77

Gene sequence:

>1128_bases
ATGTATAGAAGCAGAGATATAGCCATACAGTTATCAGAAAGGATCAAAGAGCTCTCAAAAAAGATACTCGCAGAAACAGG
GAGGGATGAATTAAATATAATGAATTTCTGCGGAACGCATGAATGGACTATAACGCATTACGGCTTAAGATCCCTAATGC
CCCCATCAGTAAACCTGGTAGCTGGGCCGGGCTGCCCAGTGTGCATCACCCCGGGATATTACATTGATATATTAATCGAT
GCGAGTTTTGAAAGAAACACCGTTGTCCTCACGTATGGGGATGCATTCAAGCTACCTGGCTCCAGGAATAAGTATCCAAG
AAGCCTTTTCCACGCTAAGGCCAATGGGGGAAACGTGAAGGTAGTATATAGTTTTCAGGATGCTGTTAAAGAAGCTGTGA
GGGAGCCGAGTAAAAGACATGTGTTCCTAGCTGTTGGATTTGAGACTACGATGCCTGCTACAGCCATCCCGCTTGTAAGC
GGGAAGATGCCTAGAAACCTATATATTCTATCAGCATATAGGCTTACACCACCAATAATGAGATTCCTCCTTGAGAAACA
CCCTGAGATAAGGCTTGATGGAATAATAGCTCCCGGCCATGTCTCAGCAGTGATCGGGGCCAACTCGTGGAGATTTGTTG
CTGAAGAGTATGGTATACCAATAGTTGTCTCGGGCTTTGAACCACTCGATGTGGTTTTATCCATTTATATGATATTGAAG
AATATTGAGGAAGGTAGACCTGGGTTAATGAATGAGTACACCAGGGTAGTCAACCCGGATGGAAACACATACGCATTTAA
AGCTATTAGTGAAGCATATACTGTGAAAGACAGTTATTGGCGGGGCATAGGATCAGTTCCATTAAGTGGCGCAGTGCATA
GCCCTAGGTATAGCAACCATGATTACCTAGAGTCAATGGGGTTTAAGGAGACAATAACCGATGATAAGCATCCTGGTTGC
ATATGTGATAAGGTGGTTCTAGGACTTGCTAAGCCAACACAATGCCCCCTCTTCATGAAGACTTGTACCCCGAACAACCC
GTATGGACCATGCATGGTTAGCTCCGAGGGTACTTGTAGAATATGGGCTGAAAACATGCCTGTGCTACATGGAGCGGTGT
TGCAGTAA

Upstream 100 bases:

>100_bases
CTGGTTGTTGAAACAGGCTATCCAGGCGTCCTGCTAGATCTAGATACCGTGCTTGATTTAAACAGGGTCAAGGAATATTC
GTGGAGATAGGGGTTTATCA

Downstream 100 bases:

>100_bases
TGATAAGTAAAATAGTAATCCTGGATGGATACACCGACGAGCCAGCAGGCCTTGGAGTACCTCCATACATAAACACTTAT
CCGAGGCTCGTTGCGGGTGC

Product: hydrogenase formation HypD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MYRSRDIAIQLSERIKELSKKILAETGRDELNIMNFCGTHEWTITHYGLRSLMPPSVNLVAGPGCPVCITPGYYIDILID
ASFERNTVVLTYGDAFKLPGSRNKYPRSLFHAKANGGNVKVVYSFQDAVKEAVREPSKRHVFLAVGFETTMPATAIPLVS
GKMPRNLYILSAYRLTPPIMRFLLEKHPEIRLDGIIAPGHVSAVIGANSWRFVAEEYGIPIVVSGFEPLDVVLSIYMILK
NIEEGRPGLMNEYTRVVNPDGNTYAFKAISEAYTVKDSYWRGIGSVPLSGAVHSPRYSNHDYLESMGFKETITDDKHPGC
ICDKVVLGLAKPTQCPLFMKTCTPNNPYGPCMVSSEGTCRIWAENMPVLHGAVLQ

Sequences:

>Translated_375_residues
MYRSRDIAIQLSERIKELSKKILAETGRDELNIMNFCGTHEWTITHYGLRSLMPPSVNLVAGPGCPVCITPGYYIDILID
ASFERNTVVLTYGDAFKLPGSRNKYPRSLFHAKANGGNVKVVYSFQDAVKEAVREPSKRHVFLAVGFETTMPATAIPLVS
GKMPRNLYILSAYRLTPPIMRFLLEKHPEIRLDGIIAPGHVSAVIGANSWRFVAEEYGIPIVVSGFEPLDVVLSIYMILK
NIEEGRPGLMNEYTRVVNPDGNTYAFKAISEAYTVKDSYWRGIGSVPLSGAVHSPRYSNHDYLESMGFKETITDDKHPGC
ICDKVVLGLAKPTQCPLFMKTCTPNNPYGPCMVSSEGTCRIWAENMPVLHGAVLQ
>Mature_375_residues
MYRSRDIAIQLSERIKELSKKILAETGRDELNIMNFCGTHEWTITHYGLRSLMPPSVNLVAGPGCPVCITPGYYIDILID
ASFERNTVVLTYGDAFKLPGSRNKYPRSLFHAKANGGNVKVVYSFQDAVKEAVREPSKRHVFLAVGFETTMPATAIPLVS
GKMPRNLYILSAYRLTPPIMRFLLEKHPEIRLDGIIAPGHVSAVIGANSWRFVAEEYGIPIVVSGFEPLDVVLSIYMILK
NIEEGRPGLMNEYTRVVNPDGNTYAFKAISEAYTVKDSYWRGIGSVPLSGAVHSPRYSNHDYLESMGFKETITDDKHPGC
ICDKVVLGLAKPTQCPLFMKTCTPNNPYGPCMVSSEGTCRIWAENMPVLHGAVLQ

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=367, Percent_Identity=38.9645776566758, Blast_Score=263, Evalue=2e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 41654; Mature: 41654

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRSRDIAIQLSERIKELSKKILAETGRDELNIMNFCGTHEWTITHYGLRSLMPPSVNLV
CCCCCCCEEEHHHHHHHHHHHHHHHCCCCCEEEEHHCCCCEEEEEEHHHHHCCCCCCEEE
AGPGCPVCITPGYYIDILIDASFERNTVVLTYGDAFKLPGSRNKYPRSLFHAKANGGNVK
ECCCCCEEECCCEEEEEEEECCCCCCEEEEEECCEEECCCCCCCCCHHHHEEECCCCCEE
VVYSFQDAVKEAVREPSKRHVFLAVGFETTMPATAIPLVSGKMPRNLYILSAYRLTPPIM
EEEEHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEECCCHHHH
RFLLEKHPEIRLDGIIAPGHVSAVIGANSWRFVAEEYGIPIVVSGFEPLDVVLSIYMILK
HHHHHCCCCEEEEEEECCCCEEEEEECCCEEEEHHHCCCCEEEECCCHHHHHHHHHHHHH
NIEEGRPGLMNEYTRVVNPDGNTYAFKAISEAYTVKDSYWRGIGSVPLSGAVHSPRYSNH
HHCCCCCCHHHHHHEEECCCCCEEEEEEHHHHHEECHHHHCCCCCCCCCCCCCCCCCCCC
DYLESMGFKETITDDKHPGCICDKVVLGLAKPTQCPLFMKTCTPNNPYGPCMVSSEGTCR
HHHHHCCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEECCCCCEE
IWAENMPVLHGAVLQ
EEECCCCEEHHHHCC
>Mature Secondary Structure
MYRSRDIAIQLSERIKELSKKILAETGRDELNIMNFCGTHEWTITHYGLRSLMPPSVNLV
CCCCCCCEEEHHHHHHHHHHHHHHHCCCCCEEEEHHCCCCEEEEEEHHHHHCCCCCCEEE
AGPGCPVCITPGYYIDILIDASFERNTVVLTYGDAFKLPGSRNKYPRSLFHAKANGGNVK
ECCCCCEEECCCEEEEEEEECCCCCCEEEEEECCEEECCCCCCCCCHHHHEEECCCCCEE
VVYSFQDAVKEAVREPSKRHVFLAVGFETTMPATAIPLVSGKMPRNLYILSAYRLTPPIM
EEEEHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEECCCHHHH
RFLLEKHPEIRLDGIIAPGHVSAVIGANSWRFVAEEYGIPIVVSGFEPLDVVLSIYMILK
HHHHHCCCCEEEEEEECCCCEEEEEECCCEEEEHHHCCCCEEEECCCHHHHHHHHHHHHH
NIEEGRPGLMNEYTRVVNPDGNTYAFKAISEAYTVKDSYWRGIGSVPLSGAVHSPRYSNH
HHCCCCCCHHHHHHEEECCCCCEEEEEEHHHHHEECHHHHCCCCCCCCCCCCCCCCCCCC
DYLESMGFKETITDDKHPGCICDKVVLGLAKPTQCPLFMKTCTPNNPYGPCMVSSEGTCR
HHHHHCCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEECCCCCEE
IWAENMPVLHGAVLQ
EEECCCCEEHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]