Definition | Desulfurococcus kamchatkensis 1221n chromosome, complete genome. |
---|---|
Accession | NC_011766 |
Length | 1,365,223 |
Click here to switch to the map view.
The map label for this gene is 218883773
Identifier: 218883773
GI number: 218883773
Start: 430852
End: 432339
Strand: Direct
Name: 218883773
Synonym: DKAM_0462
Alternate gene names: NA
Gene position: 430852-432339 (Clockwise)
Preceding gene: 218883765
Following gene: 218883776
Centisome position: 31.56
GC content: 45.63
Gene sequence:
>1488_bases ATGATAATGGGTATCAGGGCTTTATTCTCAATTATACTGCTAACCCTGGTTTTACTGGAGTCTACAAGTATACTATACGT GTTCTCACAGAACATACCCTCTAAAATAATATACATATACTTCCCGGGCTCGGACATGGAGAGAGTGCTAGCTATCGTCA GGGATGTATATGGTAATGGGAGCCAGGTCAACGTGTATACTGTAGAGCCGGATCAAGACATGGATCCGCTTCAATATCTT TACTGGCTTACAACAGGCGCTAAGCCAACTGGGGACCTTGGATCTACTACACCATACACCCTGGTGAATCAATCCAGGGT GCTCGTGTTATGGAATAGCACGGGTTTAGTGAATAATCCATTCGTGGATCCAAGTATTCACCCATACGCGTTCAACCCCT TGTTCAATACGTCAAGGAAATACATACCGCCTAGGATAATATCCCTTAGAGCCAACACGAGCTTCTACTGGGATGAATTA GGATCCGACGTCAACGTTAACCTATCCAGCAACATTCTCACAGTAGAGATTGTAAAGCATGGTTACACATGGTCCCTAAA CACATCGCTTACCAATGAGTTGACGCCTCCCAGGATACTGGTCTTAGTGAACGATACCGGGATGGTTTCAGCAGGAAACT ACACGATGAGCTTCTACGTTGTAAACGCCAGCGCAGACAACATAACACTCTTCTTCCCCGGGAGCCTTGAGATGAGTAGC GGGGTTAGCAGTGGGTTGAACAAGATAATACAGTATACTGTACAATGGTTCATGGTGAGCCGTGAAATAGTTGGAAGGCT CCCGGTTAACGCTACAGCTTGGTGGCTCAACCAGACTATGATGTCACTCAGCAACATAGCAAACCTCTTCCTCGCGAACC CCAATGTAACAAGTATCCTAATCTACGTACCACAGATGATTATACTGAGGAATGCTGTAAACGGCAACCCCTCCACGGAG CTCGTTAACGCAGTCTACTCTGGATTCAAGTCCATGCTACTGGATATCTCGAACACCTATAAGGGTTCACTACTAGCAGT ATTCAGCCCTGGGGACAAGAGTGGAAACGGGTACCTAGTTACAGTTGGAGGCAGTGTACAGCTAGACATGGTGTTCACCA GTAGCCAACTGGCCTCGCTCCTATGGTCCACGGGCTCTCTGACCCCCGTGGGCTCAAGCATACTCCTCAAAGTAATAGCT GAGAAGAACAATGAGGTAAATGATTTAACCAGCAGACTCAACGAGTTAAACATCACACTGTCATCACAGAACCAGAAGAT AAATGAGTTGAACCAGGAGCTTGCAGCATGTAGATCCGAGAACACTATTCTAAACACTGAGGTAACCAGTGTAAAGACGG AACTCGAAAAGGCTCAATCACTCTACAACCAGGCATATACATATATAACACTAGGTATAGCGGTTACCTTAGCCATAACT GCATTAATAGGGTTCCTCGTAGTTAAGACTGTAAGTAGGAAACAATAG
Upstream 100 bases:
>100_bases TGCCGGAGTCATGTGGGAGTAGCCCGGTTATCAGTAGCCTCATTGTTTCACCAAGAATGTTTATAACCCAGACGCCTTAT ACATTGTTGAATCATGGTGT
Downstream 100 bases:
>100_bases AGTGAACTTAAGGATTTTTCAAATATCCCATAATCATCCATCCAGCCCTATACGTGTCAAGGGTAAGTTAATAGTTGCTG ACTCAATATGTGAACTGGAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 495; Mature: 495
Protein sequence:
>495_residues MIMGIRALFSIILLTLVLLESTSILYVFSQNIPSKIIYIYFPGSDMERVLAIVRDVYGNGSQVNVYTVEPDQDMDPLQYL YWLTTGAKPTGDLGSTTPYTLVNQSRVLVLWNSTGLVNNPFVDPSIHPYAFNPLFNTSRKYIPPRIISLRANTSFYWDEL GSDVNVNLSSNILTVEIVKHGYTWSLNTSLTNELTPPRILVLVNDTGMVSAGNYTMSFYVVNASADNITLFFPGSLEMSS GVSSGLNKIIQYTVQWFMVSREIVGRLPVNATAWWLNQTMMSLSNIANLFLANPNVTSILIYVPQMIILRNAVNGNPSTE LVNAVYSGFKSMLLDISNTYKGSLLAVFSPGDKSGNGYLVTVGGSVQLDMVFTSSQLASLLWSTGSLTPVGSSILLKVIA EKNNEVNDLTSRLNELNITLSSQNQKINELNQELAACRSENTILNTEVTSVKTELEKAQSLYNQAYTYITLGIAVTLAIT ALIGFLVVKTVSRKQ
Sequences:
>Translated_495_residues MIMGIRALFSIILLTLVLLESTSILYVFSQNIPSKIIYIYFPGSDMERVLAIVRDVYGNGSQVNVYTVEPDQDMDPLQYL YWLTTGAKPTGDLGSTTPYTLVNQSRVLVLWNSTGLVNNPFVDPSIHPYAFNPLFNTSRKYIPPRIISLRANTSFYWDEL GSDVNVNLSSNILTVEIVKHGYTWSLNTSLTNELTPPRILVLVNDTGMVSAGNYTMSFYVVNASADNITLFFPGSLEMSS GVSSGLNKIIQYTVQWFMVSREIVGRLPVNATAWWLNQTMMSLSNIANLFLANPNVTSILIYVPQMIILRNAVNGNPSTE LVNAVYSGFKSMLLDISNTYKGSLLAVFSPGDKSGNGYLVTVGGSVQLDMVFTSSQLASLLWSTGSLTPVGSSILLKVIA EKNNEVNDLTSRLNELNITLSSQNQKINELNQELAACRSENTILNTEVTSVKTELEKAQSLYNQAYTYITLGIAVTLAIT ALIGFLVVKTVSRKQ >Mature_495_residues MIMGIRALFSIILLTLVLLESTSILYVFSQNIPSKIIYIYFPGSDMERVLAIVRDVYGNGSQVNVYTVEPDQDMDPLQYL YWLTTGAKPTGDLGSTTPYTLVNQSRVLVLWNSTGLVNNPFVDPSIHPYAFNPLFNTSRKYIPPRIISLRANTSFYWDEL GSDVNVNLSSNILTVEIVKHGYTWSLNTSLTNELTPPRILVLVNDTGMVSAGNYTMSFYVVNASADNITLFFPGSLEMSS GVSSGLNKIIQYTVQWFMVSREIVGRLPVNATAWWLNQTMMSLSNIANLFLANPNVTSILIYVPQMIILRNAVNGNPSTE LVNAVYSGFKSMLLDISNTYKGSLLAVFSPGDKSGNGYLVTVGGSVQLDMVFTSSQLASLLWSTGSLTPVGSSILLKVIA EKNNEVNDLTSRLNELNITLSSQNQKINELNQELAACRSENTILNTEVTSVKTELEKAQSLYNQAYTYITLGIAVTLAIT ALIGFLVVKTVSRKQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54533; Mature: 54533
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIMGIRALFSIILLTLVLLESTSILYVFSQNIPSKIIYIYFPGSDMERVLAIVRDVYGNG CEEEHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHCCCC SQVNVYTVEPDQDMDPLQYLYWLTTGAKPTGDLGSTTPYTLVNQSRVLVLWNSTGLVNNP CEEEEEEECCCCCCCHHHEEEEEECCCCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCC FVDPSIHPYAFNPLFNTSRKYIPPRIISLRANTSFYWDELGSDVNVNLSSNILTVEIVKH CCCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCEEHHHCCCCEEEEECCCEEEEEEEEC GYTWSLNTSLTNELTPPRILVLVNDTGMVSAGNYTMSFYVVNASADNITLFFPGSLEMSS CEEEEECCCCCCCCCCCEEEEEECCCCEEEECCEEEEEEEEEECCCEEEEEECCCCCCCC GVSSGLNKIIQYTVQWFMVSREIVGRLPVNATAWWLNQTMMSLSNIANLFLANPNVTSIL CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCEEE IYVPQMIILRNAVNGNPSTELVNAVYSGFKSMLLDISNTYKGSLLAVFSPGDKSGNGYLV EHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEE TVGGSVQLDMVFTSSQLASLLWSTGSLTPVGSSILLKVIAEKNNEVNDLTSRLNELNITL EECCCEEEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHEEEEE SSQNQKINELNQELAACRSENTILNTEVTSVKTELEKAQSLYNQAYTYITLGIAVTLAIT ECCCCHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALIGFLVVKTVSRKQ HHHHHHHHHHHHCCC >Mature Secondary Structure MIMGIRALFSIILLTLVLLESTSILYVFSQNIPSKIIYIYFPGSDMERVLAIVRDVYGNG CEEEHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHCCCC SQVNVYTVEPDQDMDPLQYLYWLTTGAKPTGDLGSTTPYTLVNQSRVLVLWNSTGLVNNP CEEEEEEECCCCCCCHHHEEEEEECCCCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCC FVDPSIHPYAFNPLFNTSRKYIPPRIISLRANTSFYWDELGSDVNVNLSSNILTVEIVKH CCCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCEEHHHCCCCEEEEECCCEEEEEEEEC GYTWSLNTSLTNELTPPRILVLVNDTGMVSAGNYTMSFYVVNASADNITLFFPGSLEMSS CEEEEECCCCCCCCCCCEEEEEECCCCEEEECCEEEEEEEEEECCCEEEEEECCCCCCCC GVSSGLNKIIQYTVQWFMVSREIVGRLPVNATAWWLNQTMMSLSNIANLFLANPNVTSIL CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCEEE IYVPQMIILRNAVNGNPSTELVNAVYSGFKSMLLDISNTYKGSLLAVFSPGDKSGNGYLV EHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEE TVGGSVQLDMVFTSSQLASLLWSTGSLTPVGSSILLKVIAEKNNEVNDLTSRLNELNITL EECCCEEEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHEEEEE SSQNQKINELNQELAACRSENTILNTEVTSVKTELEKAQSLYNQAYTYITLGIAVTLAIT ECCCCHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALIGFLVVKTVSRKQ HHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA