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The map label for this gene is ydcN [H]

Identifier: 218532810

GI number: 218532810

Start: 5267819

End: 5268448

Strand: Reverse

Name: ydcN [H]

Synonym: Mchl_4933

Alternate gene names: 218532810

Gene position: 5268448-5267819 (Counterclockwise)

Preceding gene: 218532811

Following gene: 218532808

Centisome position: 91.18

GC content: 66.35

Gene sequence:

>630_bases
ATGCAGGACATAGCGGCAAGCCTCGAGCGTGGACGGCCGAAGGATCTCGTCAGCGGCGCCCAGGTGCTTTCGGGCCAGCT
CGGCAAGACGATCCAGCGTCTGCGCAAGGCCTATAACCTCTCCCTCTCCGAACTCGCCGAGCAATCGGGCGTGGCGAAGT
CGATCATCAGCCAGATCGAGCGCAACGAGACCAATCCGACGCTGGCGACGATCTGGCGGTTGAGCCAAGCGCTCGACGTA
TCGATTGAGCGGGTGCTCGCCACCTCCGACGAAGAACCCTTCATCGAGCGCTTCTCGCGCGCCGACACCCCGCGGCTCGT
CTCCGACGACGGCAAGGTGCGGCTGGCCATCATCGGCTGGATCAAGACCGTCGAGTGGCTGCAATGGTACGATGTGACCG
CCGATGCCGGCGGGGTGCTCGAATCCGACGCGCACCAGCGCGGCTCGGTCGAGTCGCTGTCGGTGCTGGAGGGCAGCTTC
GAGGTGGATGTGGCCGGCGAAGTGCAGCGGGCGAATGCCGGCGAGACGCTACGCTACCGCTGCGACCGCCCGCACAGCAT
CCGCTGCCTCGGCGACGCGCCCGGCCGTGCGACCATGGTCGTGATCATGAAGGCCGCCGTGATGGAGTAA

Upstream 100 bases:

>100_bases
GCCTTTCGGTGCCCCGCACACGATTTCGTGATCCGATCCGCCCGCGAGGGTGTTTCCGGCGCGCGAAGATTTTGTCGGGC
ACTTTCAGCGGACCGACGTG

Downstream 100 bases:

>100_bases
TCCGGCGCCAGCCGGCTCCCCCGGGGCAGCGACATCGTACGAAAAAGGCCCCCGCCGCTCGCCAGCGACGGGGGCCTTCT
TCATGGGGCACCCTGGTCGA

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MQDIAASLERGRPKDLVSGAQVLSGQLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDV
SIERVLATSDEEPFIERFSRADTPRLVSDDGKVRLAIIGWIKTVEWLQWYDVTADAGGVLESDAHQRGSVESLSVLEGSF
EVDVAGEVQRANAGETLRYRCDRPHSIRCLGDAPGRATMVVIMKAAVME

Sequences:

>Translated_209_residues
MQDIAASLERGRPKDLVSGAQVLSGQLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDV
SIERVLATSDEEPFIERFSRADTPRLVSDDGKVRLAIIGWIKTVEWLQWYDVTADAGGVLESDAHQRGSVESLSVLEGSF
EVDVAGEVQRANAGETLRYRCDRPHSIRCLGDAPGRATMVVIMKAAVME
>Mature_209_residues
MQDIAASLERGRPKDLVSGAQVLSGQLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDV
SIERVLATSDEEPFIERFSRADTPRLVSDDGKVRLAIIGWIKTVEWLQWYDVTADAGGVLESDAHQRGSVESLSVLEGSF
EVDVAGEVQRANAGETLRYRCDRPHSIRCLGDAPGRATMVVIMKAAVME

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=168, Percent_Identity=30.952380952381, Blast_Score=87, Evalue=6e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 22952; Mature: 22952

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDIAASLERGRPKDLVSGAQVLSGQLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIE
CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHH
RNETNPTLATIWRLSQALDVSIERVLATSDEEPFIERFSRADTPRLVSDDGKVRLAIIGW
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEECCCCCEEEEEEHH
IKTVEWLQWYDVTADAGGVLESDAHQRGSVESLSVLEGSFEVDVAGEVQRANAGETLRYR
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCHHCCCCCCEEEEE
CDRPHSIRCLGDAPGRATMVVIMKAAVME
CCCCCEEEEECCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MQDIAASLERGRPKDLVSGAQVLSGQLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIE
CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHH
RNETNPTLATIWRLSQALDVSIERVLATSDEEPFIERFSRADTPRLVSDDGKVRLAIIGW
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEECCCCCEEEEEEHH
IKTVEWLQWYDVTADAGGVLESDAHQRGSVESLSVLEGSFEVDVAGEVQRANAGETLRYR
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCHHCCCCCCEEEEE
CDRPHSIRCLGDAPGRATMVVIMKAAVME
CCCCCEEEEECCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]